Table 7 Homeobox genes in X. laevis: for each HOX gene the corresponding cluster and TC is shown, as well as the most 5' clone in the assembly and the protein accession number, if available. When X. laevis genes were not identified, an identifier corresponding X. tropicalis sequence is provided.
From: XenDB: Full length cDNA prediction and cross species mapping in Xenopus laevis
IPI Accession | Description | Xenopus cluster/contig | FASTY e-value | BLASTX e-value | FL Clone | Protein Accession |
|---|---|---|---|---|---|---|
IPI00027694 | HOX-A1. | cluster:4123 contig:1 | 4.0e-85 | 1.99E-99 | 5536792 | AAH44984 |
IPI00012049 | HOX-A2. | cluster:7495 contig:1 | 4.1e-130 | 7.64E-145 | 3556495 | AAG30508 |
IPI00012050 | HOX-A3. | cluster:10945 contig:1 | 6.5e-91 | 2.89E-111 | 4683538 | AAH41731 |
IPI00020926 | HOX-A4. | fgenesh.C_1023000005 | Â | Â | Â | Â |
IPI00302291 | HOX-A5. | cluster:25739 contig:1 | 6.9e-44 | 1.27E-38 | Â | Â |
IPI00010742 | HOX-A6. | fgenesh.C_1023000003 | Â | Â | Â | Â |
IPI00010743 | HOX-A7. | cluster:3210 contig:1 | 5.8e-40 | 1.17E-64 | XL071e19 | AAA49753 |
IPI00010744 | HOX-A9. | vm_singlet:264323 | 1.2e-33 | 3.48E-29 | Â | Â |
IPI00010731 | HOX-A10. | fgenesh.C_1487000003 | Â | Â | Â | Â |
IPI00010754 | HOX-A11. | cluster:6499 contig:1 | 7.2e-42 | Was C11 | XL088b06 | Â |
IPI00305850 | HOX-A13. | vm_singlet:174355 | 3.8e-57 | 1.22E-97 | Â | Â |
IPI00294724 | HOX-B1. | fgenesh.C_2225000001 | Â | Â | Â | Â |
IPI00027261 | HOX-B2. | fgenesh.C_2225000002 | Â | Â | Â | Â |
IPI00027259 | HOX-B3. | fgenesh.C_2225000003 | Â | Â | Â | Â |
IPI00014540 | HOX-B4. | cluster:22503 contig:1 | 1.2e-27 | Â | Â | Â |
IPI00012514 | HOX-B5. | vm_singlet:57425 | 8.5e-35 | 3.92E-59 | Â | Â |
IPI00015075 | HOX-B6. | cluster:2339 contig:1 | 6.2e-42 | 2.52E-72 | XL098k02 | Â |
IPI00172584 | HOX-B7. | cluster:1985 singlet:1 | 2.6e-65 | 8.16E-77 | 4201615 | P04476 |
IPI00014536 | HOX-B8. | cluster:16406 contig:1 | 2.8e-28 | 9.90E-43 | Â | Â |
IPI00014539 | HOX-B9. | cluster:8543 contig:1 | 4.0e-30 | 1.05E-50 | XL069k06 | P31272 |
IPI00030703 | HOX-B10. | cluster:24736 contig:1 | 5.6e-48 | 6.95E-74 | Â | Â |
IPI00295561 | HOX-C4. | fgenesh.C_202000010 | Â | Â | Â | Â |
IPI00022893 | HOX-C5. | vm_singlet:33065 | 1.5e-41 | 6.14E-32 | Â | Â |
IPI00015921 | HOX-C6. | cluster:9871 singlet:1 | 4.2e-93 | 3.16E-109 | 4202432 | P02832 |
IPI00010756 | HOX-C8. | cluster:11257 contig:1 | 5.2e-95 | 9.74E-118 | XL045l21 | AAB71818 |
IPI00010757 | HOX-C9. | fgenesh.C_202000007 | Â | Â | Â | Â |
IPI00020947 | HOX-C10. | cluster:3243 contig:1 | 1.3e-51 | 1.63E-127 | 4970594 | AAO25534 |
IPI00011610 | HOX-C11. | fgenesh.C_202000005 | Â | Â | Â | Â |
IPI00010758 | HOX-C12. | vm_singlet:240042 | 2.4e-46 | 2.75E-22 | Â | Â |
IPI00010759 | HOX-C13. | cluster:21388 contig:1 | 2.0e-80 | 5.86E-89 | XL064e01 | Â |
IPI00001551 | HOX-D1. | cluster:9419 contig:1 | 2.5e-50 | 1.68E-65 | 3475513 | AAA49745 |
IPI00215882 | HOX-D3. | cluster:4099 contig:1 | 2.6e-114 | 3.48E-121 | 4684054 | Â |
IPI00012390 | HOX-D4. | cluster:21685 contig:1 | 7.1e-67 | 7.99E-83 | 5571854 | AAQ95789 |
IPI00008481 | HOX-D8. | cluster:11793 contig:1 | 5.8e-62 | 2.08E-74 | 5543040 | AAH60408 |
IPI00292734 | HOX-D9. | cluster:13847 contig:1 | 6.5e-38 | 5.28E-55 | XL045k22 | CAC44973 |
IPI00292735 | HOX-D10. | cluster:6503 contig:1 | 3.8e-135 | 3.97E-143 | 4032032 | CAC44974 |
IPI00305856 | HOX-D11. | fgenesh.C_1333000003 | Â | Â | Â | Â |
IPI00018803 | HOX-D12. | missing | Â | Â | Â | Â |
IPI00018806 | HOX-D13. | cluster:13386 contig:1 | 1.7e-93 | 2.17E-112 | 3399571 | AAO25535 |