Table 4 Promoter SNPs distribution on experimental transcription factor binding sites. Genes which have SNPs in experimentally determined transcription factor binding sites. The frequency is not significantly different from the frequency of promoter SNPs in the putative TF binding sites (p-value = 0.348).
From: The distribution of SNPs in human gene regulatory regions
Gene Accession ID | SNP Accession ID | SNP Position | TF Binding Site Start | TF Binding Site End | Binding Site Name | TRANSFAC Binding Site ID |
|---|---|---|---|---|---|---|
NM_000384 | rs9282608 | -149 | -155 | -134 | ApoB-site [25] | R03692 |
NM_000384 | rs13306199 | -82 | -86 | -61 | AF-1-k-apoB [26] | R01612 |
NM_005252 | rs4645852 | -84 | -85 | -78 | c-fos.5 [27] | R00470 |
NM_002467 | rs4645940 | -1827 | -1834 | -1820 | c-myc-PUR [28] | R04301 |
NM_002467 | rs13250910 | -322 | -326 | -310 | NHE [29] | R01804 |
NM_002690 | rs2307158 | -83 | -93 | -75 | Sp1-human-beta-polymerase [30] | R00287 |
NM_002690 | rs2307155 | -55 | -72 | -51 | CREB-beta-polymerase [31] | R00288 |
NM_000805 | rs9889551 | -100 | -102 | -95 | gastrin-negative-element [32] | R02031 |
NM_000176 | rs10482604 | -708 | -713 | -691 | GRFE [33] | R03301 |
NM_000600 | rs13447445 | -64 | -80 | -64 | NF-kappaB-IL-6 [34] | R01634 |
NM_000208 | rs1864010 | -494 | -511 | -486 | Sp1-insulin_receptor [35] | R03287 |
NM_002123 | rs2854271 | -106 | -117 | -99 | HLA-DQB1-Xbox [36] | R03695 |
NM_001063 | rs8177185 | -617 | -623 | -599 | transferrin-undefined-site [37] | R01453 |