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Table 2 Similarity match of Ginkgo unigenes to genes involved in development. The G. biloba unigene set was compared to Genbank using a BLASTP cut-off score < e-5. The top match is listed under subject description. The organ(s) from which the listed ESTs were detected are: G = megagametophyte, I = microgametophyte, and L = leaf.

From: EST analysis in Ginkgo biloba: an assessment of conserved developmental regulators and gymnosperm specific genes

Genes in Ginkgo biloba with similarity to developmental genes in other plants

Contig id.

organ

BLAST homology match

E-value

A2725

G

gi|1903019|emb|CAA71599.1| curly leaf [A. thaliana]

4.00E-37

A3095

I

gi|15231388|ref|NP_188001.1| LOB domain family protein [A. thaliana]

2.00E-21

A2815

I

gi|42541156|gb|AAS19471.1| EARLY FLOWERING 5 [A. thaliana]

1.00E-33

A3351

I

gi|4903139|dbj|BAA77836.1| extensive homology to FT (FLOWERING LOCUS T, AB027504)

4.00E-10

A241

I, L

gi|41323976|gb|AAS00054.1| CONSTANS-like protein CO1 [Populus deltoides]

1.00E-30

A1591

L

gb|AAG43405.1|AF172931_1 homeobox 1 [Picea abies]

5.00E-23

A1591

G

gi|14715183|emb|CAC44080.1| putative MADS-domain transcription factor DEFH7 [A. majus]

2.00E-39

A2737

G

gi|30230270|gb|AAM76208.1| AGAMOUS-like MADS-box transcription factor [Ginkgo biloba]

5.00E-28

A2850

I

gi|25307918|pir||S51935 probable MADS-box protein dal1 – Norway spruce dal1 [Picea abies]

5.00E-72

A629

G, L

gi|7446554|pir||T10751 MADS-box protein MADS9 – Monterey pine

6.00E-17

A352

G, I

gi|7446559|pir||T09571 MADS box protein MADS2 – Monterey pine

4.00E-75

A914

G, I

gi|18401293|ref|NP_565632.1| COP9 / CSN signalosome complex subunit [A. thaliana]

1.00E-45

A2730

G

gi|15225760|ref|NP_180854.1| COP1 regulatory protein [A. thaliana]

2.00E-60

A944

G, I

gi|30694320|ref|NP_849784.1|argonaute protein(AG01) [A. thaliana]

1.00E-56