Table 2 Files extracted from TAIR FTP site [55]. Due to the small amount of miss-annotation that may interface with the bioinformatics analysis, UTRs less that 4 nt in length and introns less than 6 nt in length were excluded from the analysis.
From: Effect of 5'UTR introns on gene expression in Arabidopsis thaliana
File | Type of data |
|---|---|
ATH1_3_UTR_20050325 | Coordinates and sequences of 3'UTRs |
ATH1_5_UTR_20050325 | Coordinates and sequences of 5'UTRs |
At_intron_20050330 | Coordinates and sequences of introns |
Sv_gene_feature.data | Coordinates of CDSs, ORFs, exons and genes |
ATH1_chr1.1con.01222004 | Chromosome 1 – complete sequence |
ATH1_chr2.1con.01222004 | Chromosome 2 – complete sequence |
ATH1_chr3.1con.01222004 | Chromosome 3 – complete sequence |
ATH1_chr4.1con.01222004 | Chromosome 4 – complete sequence |
ATH1_chr5.1con.04172003 | Chromosome 5 – complete sequence |