Table 2 The number of contigs with identifiable coding regions. ORFs were delineated based on one method (on the diagonal), based on a combination of two methods (in bold), and based on data found by both methods (in italics). The total number of snp'ed contigs was 3,590 (PSNP≥ 0.95).
Method | Blastx against uniprot e-value < e-10 | Blastx against Arabidopsis e-value < e-10 | Diogenes Brassicaceae-trained p-value < e-08 | Diogenes Pinaceae-trained p-value < e-08 |
|---|---|---|---|---|
Blastx Uniprot e-value < e-10 | 3140 | Â | Â | Â |
Blastx Arabidopsis e-value < e-10 | 3160 3060 | 3080 | Â | Â |
Diogenes Brassicaceae-trained p-value < e-08 | 3356 2607 | 3338 2565 | 2823 | Â |
Diogenes Pinaceae-trained p-value < e-08 | 3276 1929 | 3256 1889 | 2874 2014 | 2065 |