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Table 4 Tissue representation in the pooled-tissue cDNA library.

From: Generation of a large scale repertoire of Expressed Sequence Tags (ESTs) from normalised rainbow trout cDNA libraries

Tissues

Protein

Species

References

TBLASTN

BLASTX

Sequence ID

Testis

Testis Creatine kinase

O.mykiss

[23]

0

/

tcaa0001c.e.17 (BX073510)

Ovary

Factor in germ line alpha (Figa)

M. musculus

[24]

89, 7e-19

89, 9e-17

tcad0001a.a.19 (BX074063–BX074064)

Adipose tissue

Perilipin (PLIN)

H. sapiens

[25]

197, 7e-51

197, 2e-49

tcbk0010c.i.14 (BX872787)

Kidney

Collectrin

H. sapiens

[26]

141, 1e-34

141, 1e-32

tcay0014b.i.05 (BX304379–BX304380)

Fetal gonads

DMRT1

O.mykiss

[27]

0

/

tcad0009a.n.11 (BX081098–BX081099)

Liver

Liver-basic fatty acid binding protein

D. rerio

[28]

222, 1e-59

222, 3e-57

tcay0037b.e.14 (BX319796–BX319797)

Gills

FHL5

A. japonica

[29]

399, 1e-112

404, 1e-117

tcad0002a.a.17 (BX074365)

Pituitary

Growth Hormone factor 1 (Pit-1)

O. keta

[30]

156, 4e-40

156, 2e-38

tcay0007b.j.13 (BX301445–BX301446)

Blood

ERMAP

H. sapiens

[31]

163, 1e-40

163, 9e-43

tcbk0052c.l.01 (BX885983)

Brain

Brain cell membrane protein 1 (BCMP1)

C. familiaris

[32]

269, 3e-73

247, 2e-64

tcbk0029c.j.07 (BX885584)

Intestine

Intestinal mucin-like peptide

R. Norvegicus

[33]

217, 2e-56

194, 1e-48

tcac0004c.g.02 (BX083186–BX083187)

Muscle

Muscle LIM protein

R. Norvegicus

[34]

315, 4e-97

270, 2e-71

tcba0018c.g.07 (BX861190)

  1. Representative "tissue specific" protein homologs in the pooled-tissue cDNA library. Clone identity (clone ID) is given in the sequence ID column with the GenBank accession numbers in brackets. When more than one sequence was carried out on one clone (5' and 3' EST sequences), the second accession number is noted -X. For rainbow trout EST matching a rainbow trout gene only a blastN strategy was used.