miRNA (1) | longSAGE tags (2) | Chr. | EST | #libs | Tag counts | Tissue (mouse Theiler Stage) |
---|---|---|---|---|---|---|
Human SAGE tags matched to known miRNAs | ||||||
hsa-mir-302a | TTTTGGTGATGGTAAGT | 4q25 | No | 1 | 1 | Embryonic stem cell |
hsa-mir-302b (3) | GAAGTGCTTTCTGTGAC | 4q25 | Yes | 5 | 9 | Embryonic stem cell |
hsa-mir-302c | TTTCAGTGGAGGTGTCT | 4q25 | Yes | 1 | 2 | Embryonic stem cell |
hsa-mir-302d | TTTGAGTGTGGTGGTTC | 4q25 | No | 4 | 6 | Embryonic stem cell |
hsa-mir-7-1 (4) | CCTCTACAGGACAAATG | 9q21 | No | 3 | 3 | White blood cell, breast tumor, stem cell |
hsa-let-7i (4) | GCCCTGGCTGAGGTAGT | 12q14 | No | 4 | 4 | Embryonic stem cells and Fetal brain |
hsa-mir-21 | GCTGTACCACCTTGTCG | 17q23 | Yes | 2 | 2 | White blood cell, breast tumor |
hsa-mir-125a (4) | TTGCCAGTCTCTAGGTC | 19q13 | No | 1 | 1 | breast tumor (myofibroblast) |
Human SAGE tags matched to predicted miRNAs | ||||||
Lim et al. [4] | CTACTCTCACTGAGTAC | 5p21 | No | 1 | Â | Embryonic stem cell |
cand525-HS | CGGAGCCCCCGGGCTTG | 11q13 | No | 4 | Â | Embryonic stem cell and breast & lung cancer |
Mouse SAGE tags matched to known miRNAs | ||||||
mmu-mir-29b-2 (3) | GTGGCTTAGATTTTTCC | 1qH6 | Yes | 2 | 2 | Heart bulbous cordis (TS14 embryo) |
mmu-mir-205 | GAGCTGCCAGCGGTGGA | 1qH6 | Yes | 7 | 17 | Brain, forelimb & skin (embryo) |
mmu-mir-130a | CCTTTGCTGCTGGCCGG | 2qD | Yes | 1 | 1 | Branchial Arch embryonic tissue |
mmu-mir-133a-2 | GCCCAGCCAGAGGACAC | 2qH4 | Yes | 4 | 4 | Heart ventricle (TS14-19), Sk. muscle (TS25) |
mmu-mir-29a | ACCTCTTGTGACCCCTT | 6qA3 | No | 1 | 1 | Ovary (21 days post natal) |
mmu-mir-425 | GAAAGTGCTTTGGAATG | 9qF2 | Yes | 3 | 8 | Visual cortex(27days post natal), Pancreas (TS20) |
mmu-mir-331(4) | CAAGCTGAAAGCACTCC | 10qC2 | Yes | 1 | 1 | Brain – Amygdala (Post natal day 7) |
mmu-let-7i | GCCCTGGCTGAGGTAGT | 10qD2 | Yes | 4 | 4 | Sm. Intestine (TS24), Lung (TS26), Neural tube(TS13), Pancreas |
mmu-mir-21 | GCTGTACCACCTTGTCG | 11qC | Yes | 2 | 2 | Placenta (TS22), large intestine (TS24) |
mmu-mir-196a-1 | GCAGTTACTGCTTCTTG | 11qD | No | 3 | 3 | Endoderm (Definitive), kidney (TS24), testis |
mmu-mir-337 (3) | CAGGAGTTGATTGCACA | 12qF1 | No | 1 | 1 | Adrenal gland (TS22 embryo) |
mmu-mir-485 (4) | TGTGATACTTGGAGAGA | 12qF1 | No | 1 | 1 | Skin (TS21) |
mmu-mir-351 (3,4) | GCACCTCCGTTTCCCTG | XqA5 | Yes | 2 | 2 | Heart ventricle (TS14 embryo) |
mmu-mir-92-2 | CCCATTCATCCACAGGT | XqA5 | No | 1 | 1 | Thymus (TS23 embryo) |
Mouse SAGE tags matched to predicted miRNAs | ||||||
cand185-MM | TGACTGCCTGTCTGTGC | 1qH2 | Yes | 1 | 1 | Fibroblast cell line (embryonic) |
cand847-HS | GTGAGCAGATGATGCAT | 2qH1 | Yes | 1 | 1 | Brain – Whole (TS20 embryo) |
cand136-MM | AACATTATTTCTTGTGT | 4qD2 | No | 1 | 1 | Adult testis |
cand407-MM | GAGTCTTCCAAGCCAAG | 4qF4 | No | 3 | 3 | Adult bladder & mammary gland |
cand913-RN | TGACGTCTGAGGAGCGG | 11qE2 | Yes | 1 | 1 | Brain telencephalon dorsal (TS20 embryo) |
cand219-MM | GCCAATCTCCTTTCGGC | 12qF1 | Yes | 2 | 6 | Visual cortex (27 days post natal) |
cand202-MM | GTAGGCTTTCATTCATT | 12qF1 | No | 2 | 2 | Branchial arch embryonic tissue (TS15) |
cand239-MM | CAGCTTTGGAGACGCCA | 16qC3 | No | 1 | 1 | Brain – Preplate (TS21 embryo) |
cand525-MM | CGGAGCCCCCGGGCTTG | 19qA | No | 9 | 9 | Multiple normal tissues |