Table 3 Statistics of contig generation.
From: Establishment of a pipeline to analyse non-synonymous SNPs in Bos taurus
Total number of ESTs in contig assembly | 528,218 |
|---|---|
Total number of AgResearch ESTs in contig assembly | 185,845 |
Total number of public ESTs in contig assembly | 342,373 |
Number of BLAST clusters | 36,047 |
Number of BLAST singletons | 53,493 |
Number of contigs generated by CAP3 | 43,117 |
Total number of singletons (BLAST + CAP3) | 66,738 |
Total number of ESTs available for SNP detection (≥4 per contig) | 427,629 |
Total number of contigs available for SNP detection | 22,994 |