Molecular phenotype of zebrafish ovarian follicle by serial analysis of gene expression and proteomic profiling, and comparison with the transcriptomes of other animals

Knoll-Gellida, Anja; André, Michèle; Gattegno, Tamar; Forgue, Jean; Admon, Arie; Babin, Patrick J

doi:10.1186/1471-2164-7-46

Table 1 Transcripts expressed at over 0.15% in zebrafish fully-grown ovarian follicle as evaluated by the presence of their corresponding SAGE tag

From: Molecular phenotype of zebrafish ovarian follicle by serial analysis of gene expression and proteomic profiling, and comparison with the transcriptomes of other animals

Tag N°	SAGE-tag	Nbr	Rank	GenBank	Cluster	Gene	Description
1	CATGAAATAAACGC	284	R1	BM141044	Dr.12439		Transcribed locus similar to rhamnose-binding lectin
2	CATGTAAGACATCC	226	R1	BC045879	Dr.1109	bactin2	Beta-actin2
3	CATGCAGTGCTTTT	209	R1	BM531116	Dr.46793	h2b	Transcribed locus similar to H2B histone family
4	CATGAAAAAAAAAA	153	[146]
5	CATGTCCTTTGTCT	142	R1	BC049475	Dr.47289	mt2	Metallothionein 2
6	CATGTGAACTGTTT	139	[7]
7	CATGACCGTTTTTA	130	R1	BC078260	Dr.26975	cldnd	Claudin d
8	CATGCAAAGGAAAC	124	R1	BC055519	Dr.47296		Zgc:66160
9	CATGCTAGCCTAAT	122	R1cr	BM861564	Dr.5628		Similar to contains element MSR1 repetitive element/ZP1-related
10	CATGGTGAAACCTG	119	R1	AF068772	Dr.31066	hsp90b	Heat shock protein 90-beta
11	CATGTTGATGAGGG	113	R1	BC044190	Dr.729	ldhb	Lactate dehydrogenase B4
12	CATGTAAAACCAAA	108	R1	AF057040	Dr.25213	bactin1	Beta-actin1
13	CATGTATTTCACTA	98	R1	BC045894	Dr.1043	atp5g	ATP synthase, H+ trans., mit. F0 complex, subunit c (subunit 9)
14	CATGGATATTTAAC	94	R1	BI979482	Dr.47212		Transcribed locus, moderately similar to thymosin beta 10
15	CATGCATTTTCTAA	90	R1cr	BM571854	Dr.19916	zp2.3	Egg envelope protein ZP2 variant B [zp2.3]
15	CATGCATTTTCTAA	90	R1	BC093133	Dr.23439	zp2.4	Zp2.4 protein
16	CATGACAACTAAAA	89	R1	BC071411	Dr.989		Zgc:56419 similar to stress-associated endo. reticulum protein 1
17	CATGGTGTGATGGA	82	[5]
18	CATGGAAAAAAAAA	80	[38]
19	CATGAGAAACGTTT	77	R1	BC067692	Dr.26977	zp3b	Zona pellucida glycoprotein 3b
20	CATGGTGGTGTTGA	75	R1	NM_131331	Dr.30322	zp3	Zona pellucida glycoprotein 3
21	CATGCAATCATATT	75	R1	BM533765	Dr.13590		Transcribed locus, moderately similar to zygote arrest 1
22	CATGCAGAAAAATA	73	[5]
23	CATGGAAGTTGCTT	72	[6]
24	CATGCAAATGTTTT	71	R1	CK699865	Dr.29860		Transcribed locus
25	CATGAAGTTACTGT	70	[3]
26	CATGCAGTACTGCG	66	R1	AY561514	Dr.30264	rpl3	Ribosomal protein L3
27	CATGCCACTCTTTT	66	[2]
28	CATGCCATAAGTGC	66	R1	BC054596	Dr.1012		Retinol dehydrogenase 10
29	CATGATATTAATAA	65	[3]
30	CATGATTTTTTGAA	65	[5]
31	CATGTAAAGTCGCC	65	R1	BM778414	Dr.1428	rps15a	Ribosomal protein S15a
32	CATGGTCTACACGT	64	R1cr	BI325627	Dr.7383		Zgc:73301 similar to cytochrome oxidase III
33	CATGTAAATTTGAA	64	[4]
34	CATGCTTGTTGGAA	62	R1	BQ260230	Dr.29755		Wu:fe38a04 similar to RL31_HUMAN 60S ribosomal protein L31
35	CATGGGATTCGGAC	61	R1	BM102431	Dr.23788	gstp1	Glutathione S-transferase pi
36	CATGGGGTGCTTTT	61	R1	CO351922	Dr.14015		Im:7140333 weakly similar to latrophilin; lectomedin-1
37	CATGACATCACATT	60	[9]
38	CATGTGCTCCATAC	59	R1cr	BC095579	Dr.5555	ccna1	Cyclin A1
39	CATGGCATTTTTAG	58	n.m.
40	CATGAGGCTGTCTG	55	R1	BC055524	Dr.24903		Zgc:66168 similar to ubiquitin; 40S ribosomal protein S27a
41	CATGTGTTCTGTAT	55	R1	BC095694	Dr.5890		Zgc:112226 similar to cathepsin S
42	CATGTCGATGATGG	54	R1cr	BM103997	Dr.26808	rpl10a	Ribosomal protein L10a
43	CATGTTAATAAAAG	53	R1	NM_198809	Dr.5605	tubb2	Tubulin beta 2
44	CATGAGGAAAGCTG	52	R1	BC071384	Dr.1335	rpl36	Ribosomal protein L36
45	CATGGGCTTCGGTC	52	[4]
46	CATGTGCTGCTTGT	51	R1	BC045278	Dr.6496	fth1	Ferritin, heavy polypeptide 1
47	CATGATCAATGTGA	50	R1	BC075915	Dr.1209	ssr2	Signal sequence receptor, beta
48	CATGTGAGGGCTCT	49	[6]
49	CATGATATGTATTT	48	[3]
50	CATGAATTGGAGGG	47	n.m.
51	CATGTCTGTTTAAC	47	R1	BC049058	Dr.11308	rplp0	Ribosomal protein, large, P0
52	CATGAAGCCCATTA	46	R1	BC048027	Dr.4947	cirbp	Cold inducible RNA binding protein
53	CATGGTTCCTTGGC	46	R1	BQ617300	Dr.1334	rps25	Ribosomal protein S25
54	CATGTATCAGTTAT	46	[3]
55	CATGTTAGTGTGAC	46	[6]
56	CATGTGAGCCAAAT	45	[3]
57	CATGTTGTTTTTGT	43	[5]
58	CATGTAAATGAGAT	42	R1	BC054688	Dr.12480		Clone IMAGE:5604190, weakly similar to Cd27 binding protein

Nbr, is the number of times a tag was counted in ZEBRAOV; Rank, is tag position at sense (R1) or antisense (R1cr) corresponding mRNA sequence; The number in brackets indicates the number of corresponding UniGene clusters in case of a tag matching with more than one transcript, i.e. a multiple matched tag; n.m., no matched tag; Cluster, cluster accession number of zebrafish UniGene database Build#87.

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ISSN: 1471-2164

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