Table 1 Upstream (relative to the 3'-processing site) usage of AAUAAA, AWUAAA (W = A or U) or Delta 1 (AAUAAA plus all single base substitution variations).
Organism | Min EST | Sites | % AAUAAA | Count | % AWUAAA | Count | % Delta 1 | Count |
|---|---|---|---|---|---|---|---|---|
H. sapiens | 10 | 10060 | 69.9 | 7032 | 86.0 | 8654 | 97.5 | 9806 |
C. familiaris | 2 | 980 | 70.9 | 694 | 86.5 | 847 | 95.6 | 936 |
R. norvegicus | 5 | 9329 | 69.7 | 6501 | 85.3 | 7958 | 97.3 | 9074 |
M. musculus | 5 | 8543 | 70.9 | 6053 | 86.0 | 7342 | 97.0 | 8288 |
G. gallus | 2 | 3056 | 70.0 | 2140 | 85.2 | 2604 | 96.0 | 2932 |
T. rubripes | 1 | 1427 | 69.9 | 997 | 88.3 | 1259 | 96.6 | 1377 |
D. rerio | 3 | 2585 | 77.9 | 2012 | 91.1 | 2355 | 98.1 | 2535 |
A. gambiae | 1 | 1693 | 61.8 | 1046 | 71.7 | 537 | 88.9 | 1505 |
D. melanogaster | 2 | 902 | 61.7 | 556 | 73.8 | 665 | 97.0 | 874 |
C. elegans | 1 | 1003 | 51.0 | 511 | 71.6 | 717 | 87.7 | 879 |