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Table 1 Genes used in this study

From: Identification of putative cis-regulatory elements in Cryptosporidium parvum by de novo pattern finding

GENE NAME

ABBREV

LENGTH OF UPSTREAM

GENE ID

GLYCOLYSIS

   

Hexokinase

HK

852

cgd6_3800

Phosphoglycerokinase

PGK

986

cgd7_910

Phosphofructokinase 1

PFK1

455

cgd3_1400

Phospphofructokinase 2

PFK2

575

cgd2_2130

Enolase

Eno

364

cgd5_1960

Glyceraldehyde-3-phosphate dehydrogenase

GAPDH

837

cgd6_3790

Fructose-bis-phosphate Aldolase

Ald

482

cgd1_3020

Glucose-6-phosphate isomerase

G6PI

225

cgd2_3200

Lactate Dehydrogenase

LDH

891

cgd7_480

Phosphoglucomutase

PGM

606

cgd7_4270*

Pyruvate kinase

PyK

718

cgd1_2040

Triose Phosphate Isomerase

TPI

500

cgd1_3040

NUCLEOTIDE SALVAGE

   

Inosine monophosphate dehydrogenase

IMPDH

1065

cgd6_20*

Adenosine Transporter

AT

879

cgd2_310

Cytidine Triphosphate Synthase

CTPS

856

cgd5_1710

Guanidine Monophosphate Synthase

GMPS

423

cgd5_4520*

RibonucleosideDiphosphate Reductase

RDPR

627

cgd6_1950

deoxycytidine Monophosphate Deaminase

dCMPD

512

cgd2_2780

Dihydrofolate reductase-Thymidyl Synthase

DHFR-TS

481

cgd4_4460

Adenosine Kinase

AK

170

cgd8_2370*

Uridine Kinase

UK

404

cgd8_2810

Thymidine Kinase

TK

362

cgd5_4440

DNA REPLICATION

   

DNA polymerase -α-subunit

DNA pol α

879

cgd8_870

DNA polymerase -δ-catalytic subunit

DNA pol δ

234

cgd6_4410*

MCM 10p-like

MCM 10p

92

cgd6_1710

MCM 2-like

MCM2

485

cgd2_1100

MCM3-associated

MCM3-a

882

cgd3_3570

MCM3-like

MCM3

370

cgd2_1600

MCM4-like

MCM4

638

cgd2_1250

MCM5-like

MCM5

155

cgd7_2920

MCM6-like

MCM6

604

cgd6_240*

MCM7-like

MCM7

374

cgd4_970

ORC/CDC6-like

CDC6

1301

cgd4_4320

RP-A ssb protein

RP-A

730

cgd2_4080

RAD24/RF-C activator

RAD24

571

cgd7_2660

MCM7 domain containing

MCM7-c

760

cgd8_3360

OOCYST WALL PROTEINS

   

COWP1

COWP1

366

cgd6_2090

COWP3

COWP3

530

cgd4_670

COWP4

COWP4

197

cgd8_3350

COWP5

COWP5

170

cgd7_5150

COWP6

COWP6

688

cgd4_3090

COWP8

COWP8

604

cgd6_200

COWP9

COWP9

170

cgd6_210*

LARGE SECRETORY PROTEINS

   

LSP1

LSP1

370

cgd7_3800*

LSP2

LSP2

370

cgd7_3810

LSP3

LSP3

225

cgd7_3820*

LSP4

LSP4

454

cgd7_3830

LSP5

LSP5

142

cgd7_3840

LSP6

LSP6

257

cgd7_3860

LSP7

LSP7

257

cgd7_3870

  1. Descriptions of the genes used in this study, organized by functional group. The lengths of the respective upstream sequences (distance until the previous CDS) and annotated gene ids for each C. parvum gene are shown. Gene ids marked by a * are those for which corresponding ortholog information in C. hominis could not be obtained.