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Figure 2 | BMC Genomics

Figure 2

From: Global repeat discovery and estimation of genomic copy number in a large, complex genome using a high-throughput 454 sequence survey

Figure 2

Alignment of sequence survey reads to BAC clones. The figure shows a graphic of the alignment of survey reads using BLASTZ to three genomic Bacterial Artificial Chromosome (BAC) sequences of soybean DNA, and estimation of copy number. Copy number was estimated according to the number of sequence survey reads aligning to each 1 kb window of the BACs. The alignment represents the superposition of identical or closely related sequences on the BAC sequence, in order to visualize the individual reads showing regions present in many copies per genome. The BAC sequences were: A) The euchromatic BAC described by Clough et al.(20); B) the euchromatic BAC GM_WBb0098N11; C) the BAC GM_WBb0078A23 from a heterochromatic region

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BMC Genomics

ISSN: 1471-2164

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