Comparison of hybridization-based and sequencing-based gene expression technologies on biological replicates

BMC Genomics

Table 1 Statistics on overlapping genes between microarray platforms and MPSS libraries.

Expression profiles of the two mouse retina pools (MRP1 and MRP2) were obtained on five one-dye microarray platforms (Affymetrix, Amersham, Mergen, ABI, Illumina), as well as MPSS technology. Genes were matched based on mapping to UniGene cluster IDs. For each pair of data sets, the number of common genes with expression data after filtering is shown. The upper triangle and lower triangle represent the statistics for MRP1 and MRP2, respectively. The upper (right-most) and lower (left-most) diagonals show the total number of genes after filtering for each data set for MRP1 and MRP2, respectively.

ISSN: 1471-2164