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Table 1 Bacterial species/strains whose partial and/or complete genome sequence was downloaded from various sources

From: New criteria for selecting the origin of DNA replication in Wolbachia and closely related bacteria

Organism

References

Closed-Curated annotation

Genbank

Coordinates (length)

Flank One

Flank Two

% genome AT content

% ori AT content

Wolbachia pipientis w Mel_A

[15]

Y

NC_002978

988364..988765 (402 bp)

WD_1027/COG1253 (CBS)

WD_1028/hemE

64.77

75.87

Wolbachia pipientis w Bm_D

[14]

Y

NC_006833

1079740..110 (455 bp)

Wbm_0809/COG1253 (CBS)

Wbm_0001/hemE

65.82

69.89

Wolbachia pipientis w Ana_A

[43]

N

NZ_AAGB00000000

N/A (402 bp)

WwAna0355/COG1253 (CBS)

WwAna0353/hemE

N/A

75.87

Wolbachia pipientis w Sim_A

[43]

N

NZ_AAGC00000000

N/A (396 bp)

WwSim0491/COG1253 (CBS)

WwSim0492/hemE

N/A

75.51

Wolbachia pipientis w Wil_A

[44]

N

N/A

N/A (402 bp)

COG1253 (CBS)

hemE

N/A

75.49

Wolbachia pipientis w Pip_B

[45]

N

N/A

N/A (402 bp)

COG1253 (CBS)

hemE

N/A

79.17

Ehrlichia chaffeensis Arkansas

[36]

Y

CP000236

26939..27361 (423 bp)

ECH_0030/hemE

ECH_0031/COG1253

69.90

74.70

Ehrlichia ruminantium Welgevonden

[35]

Y

NC_005295

23003..23424 (422 bp)

Erum_0180/hemE

Erum_0190/COG1253

72.52

75.19

Ehrlichia ruminantium Gardel

[88]

Y

NC_006831

4149..4564 (416 bp)

ERGA_CDS_00050/hemE

ERGA_CDS_00060/COG1253

72.49

75.48

Ehrlichia canis Jake

NC_007354

Y

NC_007354

11395..11819 (425 bp)

Ecaj_0010/hemE

Ecaj_0011/COG1253

71.04

73.88

Anaplasma marginale St. Maries

[34]

Y

NC_004842

1147944..1148563 (620 bp)

AM_1301/hemE

AM_1303/COG1253

50.24

63.71

Anaplasma phagocytophilum HZ

[36]

Y

CP000235

20557..20941 (385 bp)

APH_0020/hemE

APH_0021/COG1253

58.36

71.43

Neorickettsia sennetsu Miyayama

[36]

Y

CP000237

855136..855541 (406 bp)

NSE_0967/phage uncharacterized protein

NSE_0968/hemE

58.92

71.92

 

[36]

Y

CP000237

267777..268329 (553 bp)

NSE_0324/hypothetical protein

NSE_0327/COG1253

58.92

58.22

Rickettsia typhi Wilmington

[75]

Y

NC_006142

1111114..1111496 (383 bp)

RT_0877/hemE

RT_0001/COG1806

71.08

82.25

Rickettsia prowazekii Madrid E

[73]

Y

NC_000963

1111140..1111523 (384 bp)

RP_885/hemE

RP_001/COG1806

71.00

82.55

Rickettsia conorii Malish 7

[74]

Y

NC_003103

1268361..1268755 (395 bp)

RC_1374/hemE

RC_0001/COG1806

67.56

81.52

Rickettsia felis URRWXCal2

[76]

Y

NC_007109

1484753..1485148 (396 bp)

RF_1400/hemE

RF_0001/COG1806

67.55

82.83

Caulobacter crescentus CB15

[89]

Y

NC_002696

4016703..159 (404 bp)

CC_3763/hemE

CC_0001/COG1806

32.80

43.56

  1. Y, yes; N, no; N/A, not applicable.
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BMC Genomics

ISSN: 1471-2164

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