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Table 4 Overrepresented Gene Ontologies among 604 probes showing differential expression in sex-independent comparison between WL and RJ.

From: Differential gene expression in femoral bone from red junglefowl and domestic chicken, differing for bone phenotypic traits

Type 1

GO-ID 2

GO-Name

List Hits 3

Total Hits 4

EASE-score 5

C

GO:0005842

cytosolic large ribosomal subunit (sensu Eukaryota)

12

45

6.21 E-09

P

GO:0006412

protein biosynthesis

16

143

1.88 E-07

C

GO:0005843

cytosolic small ribosomal subunit (sensu Eukaryota)

8

32

3.53 E-06

C

GO:0005840

ribosome

9

45

6.91 E-06

P

GO:0007165

signal transduction

24

428

6.08 E-05

F

GO:0003735

structural constituent of ribosome

11

97

1.79 E-04

P

GO:0000004

biological_process unknown

72

2067

2.28 E-04

F

GO:0003723

RNA binding

20

268

2.41 E-04

P

GO:0006461

protein complex assembly

7

62

4.98 E-04

C

GO:0005856

cytoskeleton

11

108

5.03 E-04

P

GO:0006508

proteolysis and peptidolysis

10

131

8.84 E-04

C

GO:0005813

centrosome

6

39

1.05 E-03

C

GO:0005794

Golgi apparatus

9

94

2.45 E-03

P

GO:0006955

immune response

7

81

2.50 E-03

P

GO:0007268

synaptic transmission

9

128

2.78 E-03

P

GO:0006629

lipid metabolism

6

64

3.29 E-03

F

GO:0005554

molecular_function unknown

62

1461

5.76 E-03

F

GO:0016301

kinase activity

6

57

7.39 E-03

F

GO:0008248

pre-mRNA splicing factor activity

6

58

8.06 E-03

C

GO:0005622

intracellular

12

178

9.61 E-03

C

GO:0008372

cellular_component unknown

71

1763

0.013

P

GO:0006468

protein amino acid phosphorylation

9

171

0.017

P

GO:0008283

cell proliferation

7

134

0.035

C

GO:0005634

nucleus

62

1587

0.035

F

GO:0003924

GTPase activity

6

81

0.037

C

GO:0016021

integral to membrane

47

1179

0.047

  1. 1 Top-level Gene Ontology: P = biological process, C = cellular component, F = molecular function
  2. 2 Gene Ontology IDs of enriched terms
  3. 3 List Hits to Category: Numbers of DE probes on microarray belonging to specific GO-IDs. Total numbers of occurrences of C, P and F among 604 DE probes were: C = 408, P = 403 and F = 415.
  4. 4 Total Hits to Category: Total numbers of probes on microarray belonging to specific GO-ID. Total numbers of occurrences of C, P and F among all probes on microarray were: C = 13074, P = 17435 and F = 13433.
  5. 5 EASE-Score: Indicates the statistical significance of the observed overrepresentation.