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Table 4 Annotations search results for a representative sample of potentially important functions.

From: Annotated Expressed Sequence Tags (ESTs) from pre-smolt Atlantic salmon (Salmo salar) in a searchable data resource

Search term

Contigs

Singlets

Contigs and singlets

GO definitions (top category GO:0008150 : biological process)

immune response

94

64

153

 

immune response GO:0006955

91

60

147

GO:0007582 : physiological process

GO:0050874 : organismal physiological process

GO:0002376 : immune system process

GO:0006955 : immune response

GO:0051869 : physiological response to stimulus

GO:0006955 : immune response

immune cell activation GO:0045321

0

1

1

GO:0007582 : physiological process

GO:0050874 : organismal physiological process

GO:0001775 : cell activation

GO:0045321 : leukocyte activation

GO:0002376 : immune system process

GO:0045321 : leukocyte activation (Exact synonym: immune cell activation)

response to stress

28

28

56

 

response to stress GO:0006950

14

13

27

GO:0050896 : response to stimulus

GO:0006950 : response to stress

inflammatory response

29

24

53

 

inflammatory response GO:0006954

26

21

47

GO:0007582 : physiological process

GO:0050874 : organismal physiological process

GO:0006954 : inflammatory response

response to virus

7

8

15

 

response to virus GO:0009615

7

5

12

GO:0050896 : response to stimulus

GO:0009607 : response to biotic stimulus

GO:0051707 : response to other organism

GO:0009615 : response to virus

wounding

2

3

5

 

response to wounding GO:0009611

2

3

5

GO:0050896 : response to stimulus

GO:0009605 : response to external stimulus

GO:0009611 : response to wounding

development

139

192

331

 

development GO:0007275

73

120

193

GO:0007275 : development

growth

74

128

202

 

growth GO:0040007

1

0

1

GO:0040007 : growth

cell growth

32

41

73

 

cell growth GO:0016049

6

1

7

GO:0040007 : growth

GO:0016049 : cell growth

regulation of growth

26

41

67

 

regulation of growth GO:0040008

0

2

2

GO:0040007 : growth

GO:0040008 : regulation of growth

GO:0050789 : regulation of biological process

GO:0040008 : regulation of growth

differentiation

71

90

161

 

regulation of differentiation

35

48

83

 

cell differentiation GO:0030154

41

52

93

GO:0009987 : cellular process

GO:0030154 : cell differentiation

GO:0007275 : development

GO:0030154 : cell differentiation

regulation of cell differentiation GO:0045595

0

2

2

GO:0009987 : cellular process

GO:0030154 : cell differentiation

GO:0045595 : regulation of cell differentiation

proliferation

86

87

173

 

regulation of proliferation

61

65

126

 

cell proliferation GO:0008283

37

37

74

GO:0009987 : cellular process

GO:0050875 : cellular physiological process

GO:0008283 : cell proliferation

GO:0007582 : physiological process

GO:0050875 : cellular physiological process

GO:0008283 : cell proliferation

regulation of cell proliferation GO:0042127

5

4

9

GO:0007582 : physiological process

GO:0050875 : cellular physiological process

GO:0008283 : cell proliferation

GO:0042127 : regulation of cell proliferation

sex

14

7

21

 

sex determination GO:0007530

2

1

3

GO:0007275 : development

GO:0007530 : sex determination

  1. Searches were done for most of the queries on a wider term and on an exact GO term in the subset [GO: biological process]. Although wider search terms are bound to produce some mismatches, they can be more useful in identifying all important matches.