Elementa | Size (kb) | Number of ORFs | % GC Contentb | Average CAI (Percent genes with low CAI)c | tRNA in Vicinity | Flanking Direct Repeats | Mobile Genetic Elements |
---|---|---|---|---|---|---|---|
Chromosome left end; SCO0001-0081 | 69.6 | 81 | 69.5 | 0.58 (59%) | - | - | 8 transposon related genes |
Gi-1; SCO0090-0099 | 6.6 | 10 | 67.1 | 0.56 (67%) | - | - | 6 transposon related genes |
GI-1; SCO0979-1000 | 25.9 | 22 | 70.7 | 0.67 (23%) | - | - | 1 phage related integrase |
Gi-2; SCO2381-2384 | 6.4 | 4 | 68.4 | 0.57 (75%) | - | - | - |
Gi-3; SCO2862-2871 | 8.6 | 10 | 65.9 | 0.54 (78%) | - | - | 1 gene similar to phage replication regulator |
Gi-4; SCO3250-3270 | 14.0 | 21 | 66.2 | 0.54 (80%) | Arg-tRNA CCT | 43 bp perfect repeat | Mostly plasmid (pSAM2) related genes |
GI-2; SCO3437-3506 | 75.0 | 70 | 68.7 | 0.60 (55%) | - | 61 bp repeat (6 mismatches) | 5 transposon related genes |
Gi-5; SCO3929-3937 | 9.2 | 8 | 68.0 | 0.59 (50%) | - | - | pSAM2 integration site, some plasmid functions |
Gi-6; SCO3980-3998 | 10.7 | 19 | 65.8 | 0.44 (100%) | Ser-tRNA TGA | 106 bp repeat (8 mismatches) | pSAM2 insertion element |
Gi-7; SCO4060-4066 | 5.2 | 7 | 66.1 | 0.43 (100%) | Ser-tRNA GGA | 88 bp repeat (4 mismatches) | 2 transposon related genes |
Gi-8; SCO4210-4213 | 3.8 | 4 | 66.8 | 0.50 (75%) | - | 19 bp perfect repeat | Some phage related genes |
Gi-9; SCO4346-4350 | 7.0 | 5 | 66.9 | 0.55 (75%) | - | - | - |
Gi-10; SCO4533-4537 | 4.3 | 5 | 72.1 | 0.70 (0%) | - | - | - |
Gi-11; SCO4615-4631 | 15.9 | 17 | 68.3 | 0.62 (31%) | Tyr-tRNA GTA | 112 bp repeat (1 mismatch) | Possible SLP1 insertion |
Gi-12; SCO5327-5350 | 21.3 | 24 | 65.3 | 0.67 (55%) | Arg-tRNA CCG | 114 bp repeat (4 mismatches) | pSAM2 integration, plasmid/phage related genes |
Gi-13; SCO5605-5620 | 12.9 | 16 | 67.0 | 0.58 (67%) | - | - | All phage related genes |
Gi-14; SCO5632-5644 | 10.4 | 13 | 63.8 | 0.44 (100%) | - | 52 bp repeat (5 mismatches) | Some plasmid related functions |
Gi-15; SCO5718-5735 | 21.8 | 18 | 68.1 | 0.56 (72%) | - | - | - |
Gi-16; SCO6120-6124 | 2.9 | 5 | 70.0 | 0.67 (25%) | - | - | - |
Gi-17; SCO6314-6338 | 23.6 | 23 | 70.2 | 0.59 (70%) | - | - | 2 transposon related genes |
GI-3; SCO6353-6405 | 56.6 | 53 | 68.6 | 0.56 (61%) | - | - | 4 transposon related genes |
GI-4; SCO6625-6642 | 30.4 | 18 | 68.6 | 0.56 (65%) | - | - | Few phage related genes |
GI-5; SCO6806-6953 | 153.3 | 148 | 69.0 | 0.60 (53%) | Pro-tRNA GGG | 44 bp perfect repeat | 1 transposon related gene at end |
Gi-18; SCO7795-7802 | 4.2 | 8 | 65.2 | 0.48 (86%) | - | - | 3 transposon related genes |
Chromosome right end; SCO7827-7845 | 20.4 | 19 | 70.1 | 0.55 (83%) | - | - | 1 transposon related gene; |