Table 2 Effect of the linear mapping on module size and enrichment
From: Exploiting combinatorial cultivation conditions to infer transcriptional regulation
Cultivation parameter | Linear mapping applied | No linear mapping | |||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Â | Disc.Expr.Pattern | # genes | # TF(pairs) | # Ann.cat | Disc. Expr. Pattern | # genes | # TF(pairs) | # Ann.cat | |||||||||||||||
Carbon | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | x | 169 | 1 | 48 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 59 | - | 5 |
| Â | -1 | 0 | 0 | 0 | -1 | 0 | 0 | 0 | x | 69 | - | - | -1 | 0 | 0 | 0 | -1 | 0 | 0 | 0 | 23 | - | - |
Nitrogen | 0 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | x | 100 | 2(1) | 8 | 0 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 42 | 2(1) | 8 |
| Â | 0 | -1 | 0 | 0 | 0 | -1 | 0 | 0 | x | 2 | - | - | 0 | -1 | 0 | 0 | 0 | -1 | 0 | 0 | 0 | - | - |
Sulfur | 0 | 0 | 1 | 0 | 0 | 0 | 1 | 0 | x | 52 | 2(1) | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 1 | 0 | 39 | 2(1) | 6 |
| Â | 0 | 0 | -1 | 0 | 0 | 0 | -1 | 0 | x | 2 | - | - | 0 | 0 | -1 | 0 | 0 | 0 | -1 | 0 | 1 | - | - |
Phosphorus | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 1 | x | 93 | 6(3) | 27 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 1 | 59 | 5(3) | 27 |
| Â | 0 | 0 | 0 | -1 | 0 | 0 | 0 | -1 | x | 4 | - | - | 0 | 0 | 0 | -1 | 0 | 0 | 0 | -1 | 1 | - | - |
Oxygen | x | x | x | x | x | x | x | x | 1 | 638 | 2 | 75 | 1 | 1 | 1 | 1 | 0 | 0 | 0 | 0 | 115 | 2 | 19 |
| Â | x | x | x | x | x | x | x | x | -1 | 383 | 5(6) | 13 | 0 | 0 | 0 | 0 | 1 | 1 | 1 | 1 | 76 | - | 5 |