Table 7 Search RNA sequences in Rfam seed structural database
From: RScan: fast searching structural similarities for structured RNAs in large databases
Rfam ID of Query | RScan Parameters1 | Hits/ST/F52 | Tsearch (s) | |||
|---|---|---|---|---|---|---|
|  | k | Mc | Id ≥ % | Ar ≥ % |  |  |
RF00005/AB042240.3/15036-15107 | 7 | 21 | 90 | 95 | 216/206/5 | 38 |
RF00001/M28193.1/1-119 | 7 | 21 | 90 | 95 | 72/70/5 | 79 |
RF00030/AY090594.1/1-274 | 9 | 27 | 80 | 95 | 2/2/2 | 140 |
RF00011/U64878.1/1-308 | 9 | 27 | 80 | 95 | 3/3/3 | 65 |
RF00010/U28101.1/1-327 | 9 | 27 | 80 | 95 | 18/16/5 | 42 |
RF00177/AF050603.1/1-475 | 9 | 27 | 80 | 95 | 74/74/5 | 884 |