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Table 1 Enriched KEGG pathways in the list of differentially expressed genes at 4 h after HAL-PDT

From: Mapping of oxidative stress responses of human tumor cells following photodynamic therapy using hexaminolevulinate

KEGG Pathway

Gene Count

%

P-Value*

Total/Down regulated gene list

oxidative phosphorylation

101/79

1.0

9.1E-10

ribosome

125/119

1.2

2E-07

cell cycle

72/64

0.7

0.0015

citrate cycle (TCA cycle)

22/20

0.2

0.0041

proteasome

25/25

0.2

0.0043

ATP synthesis

32/27

0.3

0.0047

rna polymerase

21/20

0.2

0.0065

ubiquitin mediated proteolysis

32/26

0.3

0.0078

purine metabolism

92/72

0.9

0.011

pyrimidine metabolism

58/49

0.6

0.017

cholera – infection

28/20

0.3

0.02

glycolysis/gluconeogenesis

40/33

0.4

0.023

phenylalanine, tyrosine and tryptophan biosynthesis

10/8

0.1

0.027

propanoate metabolism

26/21

0.3

0.038

insulin signaling pathway

78/59

0.8

0.044

Up-regulated gene list

ubiquinone biosynthesis

8

0.2

0.019

alzheimer's disease

10

0.2

0.022

neuroactive ligand-receptor interaction

74

1.5

0.027

type i diabetes mellitus

14

0.3

0.039

focal adhesion

54

1.1

0.044

fc epsilon ri signaling pathway

23

0.5

0.065

gap junction

27

0.5

0.072

long-term depression

22

0.4

0.076

adherens junction

22

0.4

0.085

porphyrin and chlorophyll metabolism

12

0.2

0.096

hematopoietic cell lineage

24

0.5

0.099

  1. *The gene-enrichment of functional categories was measured by determining the number of genes, belonging to the functional group in the list of modulated genes weigh against to the total analysed genes on arrays (background) using Fisher Exact test.