Figure 4

Whole genome view showing optical map vs. IRGSP or TIGR sequence data (pseudomolecules) – identification of errors and their loci (Additional file 1 and 2). 6 tracks depict data and comparison for each of the rice chromosomes (1–12): track 1 (gold solid horizontal line), in silico SwaI maps of the pseudomolecule data; track 2 (grey bars), false cut – cut present in optical map, but absent in sequence data; track 3 (red bars), gaps present in sequence but filled by optical maps; track 4 (blue bars), sequence misassemblies; track 5 (green bars), missing cut – cut present in sequence, but absent in map data; track 6 (magenta bars), new gaps called within the sequence pseudomolecule by optical maps (Table 2 and 3).