Table 2 Sequence characteristics of unannotated clones
From: Novel expressed sequences identified in a model of androgen independent prostate cancer
Clone | Accession | Length (bp) | ORF (%)* | Degree of Conservation | Spliced | polyA | Nearest SAGE Tag | Distance to SAGE (kb) | Chromosome Position | Description |
|---|---|---|---|---|---|---|---|---|---|---|
11_B09 | DQ668378 | 306 | 25.2 | +†| no | no | CCAATCTTTAACTTCCT | 8.3 | 2q31.3 | 100 kb from mRNA AK000023 |
11_E05 | DQ668379 | 1338 | 8.1 | + | no | no | GCATTTTATTTTTTAAG | 1.9 | 15q11.2 | 4 kb from mRNA AL832227 |
12_A03 | DQ668380 | 543 | 46.8 | + | no | no | GTTCTCTGATTCCTAAG | 14.5 | 2q31.3 | 50 kb from EST CF140309 |
12_A06 | DQ668381 | 324 | 39.2 | + | no | no | TGCAGGAGACTAGCAAG | 11.6 | 2q32.3 | Intron of TMEFF2 |
12_E10 | DQ668383 | 576 | 46.7 | + | no | no | No tag in clone | N/A | 22q13.2 | 8 kb from mRNA BX648018 |
13_F09 | DQ668384 | 454 | 50.7 | + | no | yes | AGCCTCCTCCTCTCCTT | 6.4 | 21q21.1 | Intron of NCAM2 |
13_G01 | DQ668385 | 261 | 41.0 | + | no | yes | ATTTTCATTGCTTTTAT | 7.2 | 18q22.3 | Intron of NETO1 |
13_G06 | DQ668386 | 389 | 32.1 | + | no | yes | GAACAAAGACAGATATG | 2.0 | 8q22.3 | Intron of GRHL2 |
14_D01 | DQ668387 | 134 | 77.6 | +++ | no | no | ATTTTATGGTTATTATT | 8.7 | 3p14.2 | Intron of FHIT |
1a_A04 | EC093934 | 245 | 25.3 | + | no | no | No tag in clone | N/A | 21q21.1 | Intron of NCAM2 |
1a_C02 | DQ668388 | 1853 | 12.4 | ++ | no | no | TCTTACTTTTTCATTAG | 2.2 | 5q23.1 | Intron of TNFAIP8 |
1a_E09 | DQ668389 | 796 | 29.5 | + | no | no | TCAGATTTTGGATATCC | 1.9 | 10p12.31 | Intron of NEBL |
1b_C12 | DQ668390 | 555 | 16.8 | + | no | no | GGATGGGATCAAGAGAG | 17.5 | 14q12 | Intron of PRKD1 |
1c_D03 | DQ668391 | 292 | 18.5 | + | no | no | No tag in clone | N/A | 21q21.1 | Intron of NCAM2 |
1c_E10 | DQ668392 | 679 | 14.9 | + | no | no | TACTTACGATTTTTCAG | 0.0 | 8q22.1 | Intron of DKFZp779L1068 |
1c_F02 | DQ668393 | 475 | 26.7 | + | no | no | TTCTAGCTCCATTGACT | 1.8 | 8p11.22 | Intron of ADAM2 |
1d_E01 | DQ668394 | 771 | 26.7 | + | no | no | TATACAACTGTAGATGC | 0.15 | 16q12.1 | Intron of CDA08 |
1d_F04 | DQ668395 | 465 | 21.9 | +++ | no | yes | No tag in clone | N/A | 5q21.3 | Intron of EFNA5 |
2c_A06 | EC094025 | 658 | 10.8 | ++ | no | no | No tag in clone | N/A | 20p12.1 | Intron of DSTN |
2c_C10 | DQ668396 | 371 | 28.0 | ++ | no | yes | TTCTAGCTCCATTGACT | 6.4 | 8p11.22 | Intron of ADAM2 |
2c_G10 | DQ668397 | 969 | 19.8 | + | no | no | TCAATGGAGGATGATAG | 0.24 | 4q23 | Intron of PPP3CA |
2d_B01 | DQ668398 | 1100 | 15.2 | + | no | no | GAATCTGGATAAAGACT | 0.0 | 10q21.1 | 87 kb from EST BG194644 |
2d_D06 | DQ668399 | 598 | 37.0 | + | no | yes | TTGTAACAAGTTAGTAA | 0.0 | 12p13.2 | Intron of mRNA K03207 |
2d_D09 | EC094055 | 627 | 26.6 | + | no | no | GCAACACTGCACTCCAG | 8.8 | 12q21.31 | Intron of PPFIA2 |
2d_E01 | DQ668400 | 722 | 34.8 | + | no | no | CAGAAAAAACAAAACAG | 23.2 | 8q24.23 | Intron of EST BQ226050 |