Table 2 Enriched cluster categories in region A: "Pezizomycotina abundant"
From: Comparison of protein coding gene contents of the fungal phyla Pezizomycotina and Saccharomycotina
Software or database | Database identifier | Category | Count of clusters in region | % of clusters in region | % of all clusters with category | P-value | Author assignment | Figure 13 |
|---|---|---|---|---|---|---|---|---|
ProtFun | - | Enzyme/nonenzyme: Enzyme | 180 | 91.0 | 5 | 1.60E-11 | - | - |
ProtFun | - | Enzyme class: Uncategorised | 147 | 74.0 | 6 | 1.60E-17 | - | - |
ProtFun | - | Cellular role: Uncategorised | 143 | 72.0 | 4 | 2.10E-02 | - | - |
Funcat | 01 | Metabolism | 81 | 41.0 | 6 | 8.00E-06 | Metabolism | - |
ProtFun | - | TargetP: Uncategorised | 71 | 36.0 | 5 | 1.40E-04 | - | - |
Funcat | 01.05 | C-compound and carbohydrate metabolism | 41 | 21.0 | 10 | 1.30E-07 | Plant biomass degradation | - |
ProtFun | - | TargetP: Secretion | 39 | 20.0 | 9 | 1.30E-07 | - | - |
ProtFun | - | Cellular role: Cell envelope | 30 | 15.0 | 11 | 1.20E-08 | - | - |
Funcat | 01.05.01 | C-compound and carbohydrate utilization | 29 | 15.0 | 10 | 1.30E-05 | Plant biomass degradation | - |
Funcat | 32 | Cell rescue, defence and virulence | 24 | 12.0 | 7 | 6.50E-03 | Virulence/Defence | - |
Funcat | 01.05.01.01 | C-compound, carbohydrate catabolism | 22 | 11.0 | 22 | 4.40E-11 | Plant biomass degradation | - |
ProtFun | - | TMHMM: Uncategorised | 20 | 10.0 | 7 | 3.70E-03 | - | - |
Funcat | 01.20 | Secondary metabolism | 19 | 10.0 | 22 | 1.40E-09 | 2ary metabolism | - |
Funcat | 32.05 | Disease, virulence and defence | 14 | 7.0 | 23 | 1.00E-07 | Virulence/Defence | - |
Funcat | 01.05.01.01.02 | Polysaccharide degradation | 13 | 7.0 | 27 | 3.50E-08 | Plant biomass degradation | - |
Funcat | 32.05.05 | Virulence, disease factors | 9 | 5.0 | 45 | 3.20E-08 | Virulence/Defence | - |
Interpro | IPR001128 | Cytochrome P450 | 8 | 4.0 | 42 | 1.30E-07 | 2ary metabolism | YES |
Interpro | IPR002347 | Glucose/ribitol dehydrogenase | 8 | 4.0 | 21 | 4.60E-05 | 2ary metabolism | YES |
Funcat | 32.07 | Detoxification | 7 | 4.0 | 10 | 2.20E-02 | 2ary metabolism | - |
Interpro | IPR002198 | Short-chain dehydrogenase/reductase SDR | 7 | 3.5 | 21 | 1.60E-04 | 2ary metabolism | YES |
Interpro | IPR006094 | FAD linked oxidase, N-terminal | 5 | 2.5 | 56 | 6.30E-06 | 2ary metabolism | YES |
Interpro | IPR003042 | Aromatic-ring hydroxylase | 5 | 2.5 | 36 | 8.60E-05 | 2ary metabolism | YES |
Funcat | 01.25 | Extracellular metabolism | 4 | 2.0 | 36 | 7.30E-04 | Plant biomass degradation | - |
Funcat | 02.16 | Fermentation | 4 | 2.0 | 20 | 8.00E-03 | Metabolism | - |
Funcat | 01.05.01.01.01 | Sugar, glucoside, polyol and carboxylate catabolism | 4 | 2.0 | 19 | 9.50E-03 | Plant biomass degradation | - |
Funcat | 30.05 | Transmembrane signal transduction | 4 | 2.0 | 12 | 4.50E-02 | Signalling | - |
Interpro | IPR011050 | Pectin lyase fold/virulence factor | 4 | 2.0 | 27 | 1.60E-03 | Plant biomass degradation | NO |
Interpro | IPR000873 | AMP-dependent synthetase and ligase | 4 | 2.0 | 25 | 2.10E-03 | 2ary metabolism | YES |
Interpro | IPR008985 | Concanavalin A-like lectin/glucanase | 4 | 2.0 | 24 | 2.60E-03 | Plant biomass degradation | NO |
Funcat | 32.10.07 | Degradation of foreign (exogenous) polysaccharides | 3 | 2.0 | 50 | 1.20E-03 | Plant biomass degradation | - |
Funcat | 01.01.09.05 | Metabolism of tyrosine | 3 | 2.0 | 43 | 2.10E-03 | 2ary metabolism | - |
Funcat | 01.05.01.01.09 | Aerobic aromate catabolism | 3 | 2.0 | 43 | 2.10E-03 | Metabolism | - |
Funcat | 32.10 | Degradation of foreign (exogenous) compounds | 3 | 2.0 | 38 | 3.30E-03 | Plant biomass degradation | - |
Funcat | 02.25 | Oxidation of fatty acids | 3 | 2.0 | 27 | 8.80E-03 | 2ary metabolism | - |
Interpro | IPR010730 | Heterokaryon incompatibility | 3 | 1.5 | 75 | 1.80E-04 | Mating | YES |
Interpro | IPR003661 | Histidine kinase A, N-terminal | 3 | 1.5 | 43 | 1.40E-03 | Signalling | NO |
Interpro | IPR006163 | Phosphopantetheine-binding | 3 | 1.5 | 43 | 1.40E-03 | 2ary metabolism | YES |
Interpro | IPR005467 | Histidine kinase | 3 | 1.5 | 38 | 2.20E-03 | Signalling | NO |
Interpro | IPR001789 | Response regulator receiver | 3 | 1.5 | 33 | 3.20E-03 | Signalling | NO |
Funcat | 30.05.01.10 | Two-component signal transduction system | 2 | 1.0 | 67 | 4.90E-03 | Signalling | - |
Funcat | 32.05.05.01 | Toxins | 2 | 1.0 | 50 | 9.50E-03 | 2ary metabolism | - |
Funcat | 01.01.09.05.02 | Degradation of tyrosine | 2 | 1.0 | 40 | 1.50E-02 | 2ary metabolism | - |
Funcat | 01.20.37 | Biosynthesis of peptide derived compounds | 2 | 1.0 | 40 | 1.50E-02 | 2ary metabolism | - |
Funcat | 34.11.11 | Rhythm (e.g. circadian, ultradian) | 2 | 1.0 | 40 | 1.50E-02 | Other | - |
Funcat | 01.01.09.04 | Metabolism of phenylalanine | 2 | 1.0 | 33 | 2.30E-02 | 2ary metabolism | - |
Funcat | 01.25.01 | Extracellular polysaccharide degradation | 2 | 1.0 | 33 | 2.30E-02 | Plant biomass degradation | - |
Funcat | 16.05 | Polysaccharide binding | 2 | 1.0 | 33 | 2.30E-02 | Plant biomass degradation | - |
Funcat | 16.21.05 | FAD/FMN binding | 2 | 1.0 | 33 | 2.30E-02 | 2ary metabolism | - |
Funcat | 01.01.11.03.02 | Degradation of valine | 2 | 1.0 | 29 | 3.10E-02 | 2ary metabolism | - |
Funcat | 30.05.01 | Receptor enzyme mediated signalling | 2 | 1.0 | 25 | 4.00E-02 | Signalling | - |
Funcat | 01.20.35.01 | Biosynthesis of phenylpropanoids | 2 | 1.0 | 22 | 5.00E-02 | 2ary metabolism | - |
Interpro | IPR000675 | Cutinase | 2 | 1.0 | 100 | 1.30E-03 | Plant biomass degradation | NO |
Interpro | IPR001077 | O-methyltransferase, family 2 | 2 | 1.0 | 100 | 1.30E-03 | Regulation | NO |
Interpro | IPR002227 | Tyrosinase | 2 | 1.0 | 100 | 1.30E-03 | 2ary metabolism | NO |
Interpro | IPR008922 | Di-copper centre-containing | 2 | 1.0 | 100 | 1.30E-03 | Dubious | NO |
Interpro | IPR012951 | Berberine/berberine-like | 2 | 1.0 | 100 | 1.30E-03 | 2ary metabolism | NO |
Interpro | IPR000743 | Glycoside hydrolase, family 28 | 2 | 1.0 | 67 | 3.70E-03 | Plant biomass degradation | NO |
Funcat | 01.05.01.01.11 | Anaerobic aromate catabolism | 1 | 1.0 | 100 | 4.10E-02 | Metabolism | - |
Funcat | 01.20.01.09 | Biosynthesis of aminoglycoside antibiotics | 1 | 1.0 | 100 | 4.10E-02 | 2ary metabolism | - |
Funcat | 01.20.23 | Biosynthesis of secondary products derived from L-methionine | 1 | 1.0 | 100 | 4.10E-02 | 2ary metabolism | - |
Funcat | 01.20.36 | Non-ribosomal peptide synthesis | 1 | 1.0 | 100 | 4.10E-02 | 2ary metabolism | - |
Funcat | 01.20.37.05 | Biosynthesis of beta-lactams | 1 | 1.0 | 100 | 4.10E-02 | 2ary metabolism | - |
Funcat | 02.16.03.03 | Heterofermentative pathway and fermentation of other saccharides | 1 | 1.0 | 100 | 4.10E-02 | Metabolism | - |
Funcat | 32.05.05.03 | Bacteriocins | 1 | 1.0 | 100 | 4.10E-02 | 2ary metabolism | - |
Funcat | 32.07.09 | Detoxification by degradation | 1 | 1.0 | 100 | 4.10E-02 | 2ary metabolism | - |
Funcat | 34.11.01.01 | Light environment response | 1 | 1.0 | 100 | 4.10E-02 | Signalling | - |
Funcat | 36.20.18 | Plant hormonal regulation | 1 | 1.0 | 100 | 4.10E-02 | Signalling | - |