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Table 2 The distribution of identified riboswitches over taxonomic groups and riboswitch classes

From: Abundance and functional diversity of riboswitches in microbial communities

Riboswitch Class

α

β

γ

δ

B/C

Cya

Frm

Act

Unk

S-box

-

-

-

-

-

-

-

-

4

1.5

2

0.8

-

-

1

0.8

5

0.13

RFN

2

0.1

-

-

1

0.1

1

0.4

-

-

-

-

-

-

-

-

3

0.1

LYS

-

-

-

-

1

0.1

-

-

-

-

-

-

-

-

-

-

-

-

B12

12

0.6

3

1.7

13

1.4

1

0.4

5

1.9

-

-

-

-

-

-

27

0.7

THI-box

17

0.9

2

1.1

32

3.5

-

-

3

1.1

1

0.4

3

2.0

-

-

33

0.9

G-box

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

1

0.03

GLMS

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

2

0.05

GCVT

88

4.7

4

2.2

8

0.9

-

-

-

-

-

-

5

3.3

-

-

14

0.4

YKKC/YXKD

1

0.05

1

0.6

1

0.1

2

0.8

-

-

-

-

-

-

-

-

-

-

YKOK

-

-

-

-

-

-

-

-

1

0.4

-

-

-

-

-

-

-

-

YYBP/YKOY

1

0.05

1

0.6

2

0.2

-

-

-

-

-

-

-

-

-

-

7

0.2

Total

121

6.4

11

6.1

58

6.3

4

1.6

13

4.8

3

1.2

8

5.3

1

0.8

92

2.4

  1. The first subcolumn in each column is the number of riboswitches, the second subcolumn is the normalized frequences of riboswitch occurrence (the number of riboswitches per 105 bp). Columns: α,β,γ,δ – classes of Proteobacteria, B/C – Bacteroidetes/Chlorobi, Cya – Cyanobacteria, Frm – Firmicutes, Act – Actinobacteria, Unk – unknown taxonomy.
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BMC Genomics

ISSN: 1471-2164

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