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Table 2 Top 40 known genes altered by MS-275 in MC3T3-E1 cells

From: Gene profile analysis of osteoblast genes differentially regulated by histone deacetylase inhibitors

Gene

Fold Change

Welch Test

Induced

  

   AMP deaminase 3

4.177

1.93E-06

   Musculoskeletal, embryonic nuclear protein 1

3.427

1.35E-05

   Adenylosuccinate synthetase like 1

3.038

4.20E-05

   Amphiregulin

2.710

4.64E-05

   Lysyl oxidase

2.697

1.92E-06

   Colony stimulating factor 1 (macrophage)

2.694

9.32E-05

   Fatty acid binding protein 4, adipocyte

2.518

4.52E-05

   Chemokine (C-C motif) ligand 9

2.505

4.00E-05

   Solute carrier family 9 isoform 3 regulator 1

2.477

3.63E-06

   Sorbitol dehydrogenase 1

2.431

1.89E-07

   Troponin C, cardiac/slow skeletal

2.408

6.23E-05

   Proline arginine-rich end leucine-rich repeat

2.391

2.05E-05

   Glutaminyl-peptide cyclotransferase (glutaminyl cyclase)

2.387

7.24E-05

   Inhibitor of DNA binding 1

2.358

1.24E-05

   Solute carrier family 40, member 1

2.275

1.04E-04

   Glutathione S-transferase, alpha 4

2.268

3.40E-07

   Septin 4

2.195

9.94E-05

   Voltage-dependent calcium channel gamma subunit-like

2.187

4.78E-05

   Immediate early response 3

2.171

4.22E-06

   Dimethylarginine dimethylaminohydrolase 1

2.165

1.49E-06

   Similar to Normal mucosa of esophagus specific gene 1

2.157

2.91E-06

   MAS-related GPR, member F

2.122

1.15E-04

   Microtubule-associated protein tau

2.101

9.32E-06

   Retinoic acid induced 3

2.095

1.92E-05

   High mobility group AT-hook 1

2.088

7.18E-05

   A disintegrin-like and metalloprotease with thrombospondin type 1 motif, 5

2.088

7.60E-05

   Connective tissue growth factor

2.075

3.62E-05

   A kinase (PRKA) anchor protein (gravin) 12

2.036

1.78E-05

   Aldehyde dehydrogenase family 3, subfamily A1

2.029

1.25E-04

   Galactokinase 2

2.017

2.88E-06

   Dystrophia myotonica kinase, B15

2.014

3.81E-05

   Thrombospondin 1

2.005

7.11E-05

Suppressed

  

   Proline 4-hydroxylase, alpha polypeptide III

-2.006

4.79E-06

   Interleukin 1 receptor-like 1

-2.035

4.28E-06

   Proteasome (prosome, macropain) subunit, beta type 10

-2.063

2.96E-06

   Guanylate nucleotide binding protein 2

-2.284

2.04E-06

   Transcription factor AP-2 beta

-2.299

2.27E-05

   Sirtuin 1

-2.450

6.21E-05

   Adaptor-related protein complex AP-4, sigma 1

-2.484

1.97E-06

  1. All genes were present at a FDR of 0.01 (99% confidence) relative to the vehicle control, DMSO. The list excludes ESTs and other non-annotated sequences.