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Table 2 Top 100 genes identified in Norwegian Landrace

From: Gene expression profiles in testis of pigs with extreme high and low levels of androstenone

ID

Name

gene_id

M

adj.P.Val

214052

Carbonyl reductase/NADP-retinol dehydrogenase (DHRS4)

NM_214019.1

1.106

1.94e-08

213358

Microtubule-associated protein 1 light chain 3 alpha (MAP1LC3A)

NM_032514.2

0.805

2.41e-08

210231

Ferritin, light polypeptide (FTL)

NM_000146.3

0.884

2.49e-08

103463

Cytochrome P450 17A1 (CYP17A1)

NM_214428.1

1.278

3.06e-08

209574

KIAA1423 (KIAA1423)

XM_376550.2

0.466

3.06e-08

215500

Ferritin, light polypeptide (FTL)

NM_000146.3

0.820

3.27e-08

210851

Ferritin, light polypeptide (FTL)

NM_000146.3

0.910

4.39e-08

211570

Similar to hypothetical protein (LOC475155)

XM_532385.1

0.488

9.99e-08

217877

Ferritin, light polypeptide (FTL)

NM_000146.3

0.838

1.76e-07

218005

  

0.902

1.82e-07

220047

Cell division cycle associated 7 (CDCA7), transcript variant 1

NM_031942.3

-0.524

2.21e-07

203529

Cystatin F (leukocystatin) (CST7)

NM_003650.2

0.727

3.30e-07

211448

Golgi phosphoprotein 3-like (GOLPH3L)

NM_018178.3

0.778

4.07e-07

213434

Eukaryotic translation elongation factor 1 alpha 1 (EEF1A1)

NM_001402.4

0.884

4.76e-07

213869

PRA1 domain family, member 2 (PRAF2)

NM_007213.1

0.258

1.79e-06

105119

Steroidogenic acute regulatory protein (STAR)

NM_213755.2

0.378

1.79e-06

100252

Ras homolog gene family, member Q (Rhoq)

NM_053522.1

0.330

4.40e-06

209883

  

0.442

7.35e-06

211898

POU domain, class 3, transcription factor 2 (POU3F2)

NM_005604.2

0.541

7.81e-06

102025

Cytochrome b-5 (CYB5)

NM_001001770.1

0.397

8.88e-06

209731

Ferritin heavy-chain (FTH1)

NM_213975.1

0.421

2.15e-05

201622

Hypothetical protein LOC285016 (LOC285016)

NM_001002919.1

0.602

2.60e-05

101322

Ferredoxin (FDX1)

NM_214065.1

0.420

2.69e-05

206784

Ferritin heavy-chain (FTH1)

NM_213975.1

0.345

4.90e-05

209887

  

0.378

5.19e-05

215969

N-acetylglucosamine-1-phosphotransferase, gamma subunit (GNPTG)

NM_032520.3

0.362

5.50e-05

211014

Elastin microfibril interfacer 2 (EMILIN2)

NM_032048.2

0.235

5.50e-05

211919

  

0.393

5.50e-05

210951

Ferritin heavy-chain (FTH1)

NM_213975.1

0.401

6.77e-05

105008

Cytochrome P450 19A2 (CYP19A2)

NM_214430.1

0.338

8.16e-05

210738

Ferritin heavy-chain (FTH1)

NM_213975.1

0.424

8.16e-05

201823

Cytochrome b-5 (CYB5)

NM_001001770.1

0.454

8.16e-05

100826

Chromosome 15 open reading frame 24 (C15orf24)

NM_020154.2

-0.230

8.39e-05

101872

Anthrax toxin receptor 1 (ANTXR1), transcript variant 1

NM_032208.1

0.339

8.39e-05

211040

Cytochrome P450 11A1 (CYP11A1)

NM_214427.1

0.479

9.63e-05

103622

Chaperonin containing TCP1, subunit 4 (delta) (CCT4)

NM_006430.2

0.222

0.00010

211683

Ferritin heavy-chain (FTH1)

NM_213975.1

0.390

0.00010

209678

Parvin, gamma (PARVG)

NM_022141.4

0.354

0.00012

211043

Testis expressed sequence 261 (TEX261)

NM_144582.2

0.321

0.00014

100650

Brain expressed, X-linked 1 (BEX1)

NM_018476.2

0.410

0.00017

102207

Similar to RUN and FYVE domain-containing 2 (LOC441022)

XM_496700.1

0.322

0.00019

202502

A disintegrin and metalloproteinase domain 5 (ADAM5)

NR_001448.1

0.265

0.00019

221253

Adaptor-related protein complex 1, mu 2 subunit (AP1M2)

NM_005498.3

0.277

0.00019

210077

Cytochrome P450 2C49 (CYP2C49)

NM_214420.1

0.211

0.00020

201085

  

0.288

0.00021

211785

Zinc finger, DHHC domain containing 14 (ZDHHC14)

NM_153746.1

0.346

0.00023

104944

GTP cyclohydrolase 1 (dopa-responsive dystonia) (GCH1)

NM_000161.1

-0.593

0.00024

201672

  

0.293

0.00026

102125

Hypothetical protein HSPC138 (HSPC138)

NM_016401.2

0.209

0.00026

211821

Phosphatidylserine receptor (PTDSR)

NM_015167.1

0.726

0.00033

204992

  

0.415

0.00036

202380

Protein phosphatase 1, regulatory subunit 2 pseudogene 3 (PPP1R2P3)

NR_002168.1

0.422

0.00037

213748

Hypothetical protein LOC284106 (LOC284106)

XM_375449.1

0.221

0.00037

103177

Cytochrome b-5 (CYB5)

NM_001001770.1

0.566

0.00037

103075

Emopamil binding protein (sterol isomerase) (EBP)

NM_006579.1

0.227

0.00038

210827

Membrane-associated protein 17 (MAP17)

NM_001001769.1

0.269

0.00039

213497

NADH dehydrogenase (ubiquinone) 1, 1, 6kDa (NDUFC1)

NM_002494.2

0.271

0.00039

104615

Superoxide dismutase 1, soluble (SOD1)

NM_000454.4

0.268

0.00040

103619

Glucan (1,4-alpha-), branching enzyme 1 (GBE1)

NM_000158.1

0.291

0.00046

214976

Cyclin M2 (CNNM2), transcript variant 1

NM_017649.3

0.181

0.00049

216693

Calcium/calmodulin-dependent protein kinase II beta (CAMK2B)

NM_172081.1

-0.404

0.00052

101799

Sarcolemma associated protein (SLMAP)

NM_007159.2

0.298

0.00052

100935

ADP-ribosylation-like factor 6 interacting protein 6 (ARL6IP6)

NM_152522.2

0.246

0.00053

203697

Hypothetical protein MGC40579 (MGC40579)

NM_152776.1

0.394

0.00055

101031

RIKEN cDNA B230380D07 gene (B230380D07Rik)

NM_172772.1

0.354

0.00055

209872

Aldo-keto reductase family 1, member C4 (AKR1C4)

NM_001818.2

0.634

0.00057

102689

Sulfotransferase family, cytosolic, 2A (SULT2A1)

NM_003167.2

0.326

0.00060

214972

Similar to Bax inhibitor-1 (BI-1) (LOC451883)

XM_509049.1

0.269

0.00060

209191

Chromosome 20 open reading frame 50 (C20orf50)

XM_046437.7

0.342

0.00062

101010

NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa (NDUFV1)

NM_007103.2

0.195

0.00069

217625

Leucine rich repeat neuronal 1 (LRRN1)

NM_020873.3

0.235

0.00070

100267

Transducer of ERBB2, 1 (TOB1)

NM_005749.2

0.252

0.00070

204605

Maltase-glucoamylase (alpha-glucosidase) (MGAM)

NM_004668.1

-0.273

0.00070

100575

17beta-estradiol dehydrogenase (HSD17B4)

NM_214306.1

0.262

0.00070

104294

Sarcoglycan, epsilon (SGCE)

NM_003919.1

0.223

0.00075

214602

Acetyl-Coenzyme A carboxylase alpha (ACACA), transcript variant 2

NM_198839.1

0.294

0.00085

100781

Protein kinase, AMP-activated, beta 2 non-catalytic subunit (PRKAB2)

NM_005399.3

0.267

0.00090

204606

  

-0.229

0.00091

100545

Isopentenyl-diphosphate delta isomerase (IDI1)

NM_004508.2

0.266

0.00111

210439

FK506 binding protein 1A, 12kDa (FKBP1A), transcript variant 12B

NM_000801.2

0.233

0.00112

101524

Alpha-1,3-galactosyltransferase (GGTA1)

NM_213810.1

0.274

0.00120

103263

Retinol dehydrogenase 12 (all-trans and 9-cis) (RDH12)

NM_152443.1

0.297

0.00124

201437

Hypothetical protein MGC40489 (MGC40489)

XM_373742.3

-0.239

0.00124

219641

Ras association (RalGDS/AF-6) domain family 4 (RASSF4)

NM_032023.3

0.294

0.00124

218092

Procollagen C-endopeptidase enhancer (PCOLCE)

NM_002593.2

0.330

0.00124

214348

Glycerol-3-phosphate dehydrogenase 1-like (GPD1L)

NM_015141.2

0.205

0.00133

210245

Complement component 1, r subcomponent (C1R)

NM_001733.2

0.221

0.00136

209875

Scavenger receptor class B member 1 (SCARB1)

NM_213967.1

0.253

0.00145

105364

Tumor necrosis factor, alpha-induced protein 6 (TNFAIP6)

NM_007115.2

0.241

0.00147

212682

Sulfotransferase family, cytosolic, 2B, member 1 (SULT2B1)

NM_177973.1

0.206

0.00149

102760

  

0.310

0.00152

101913

Heat shock 60kDa protein 1 (chaperonin) (HSPD1)

NM_002156.4

0.265

0.00154

214601

Serine/threonine kinase 19 (STK19), transcript variant 1

NM_004197.1

0.298

0.00160

101632

Nuclear receptor coactivator 2 (NCOA2)

NM_006540.1

0.287

0.00160

210848

Annexin A7 (ANXA7), transcript variant 1

NM_001156.2

0.182

0.00160

221285

Serine (or cysteine) proteinase inhibitor, clade B member 3 (SERPINB3)

NM_006919.1

0.225

0.00160

219203

Peroxiredoxin 2 (PRDX2), nuclear gene encoding mitochondrial protein

NM_005809.4

0.325

0.00170

216273

  

0.257

0.00185

217065

Endonuclease G-like 1 (ENDOGL1)

NM_005107.1

-0.364

0.00185

211482

Ubiquitin-conjugating enzyme E2R 2 (UBE2R2)

NM_017811.3

0.229

0.00196

  1. Gene profiling was done using 30 arrays and analysed using linear models. Fold change (M-values) and statistical significance (FDR-adjusted p-values) is shown. The clone names refer to hits to human, mouse or pig genes. Some genes are represented by several different clones on the array and may therefore show up more than once in the table, while some have no hits to the abovementioned species.