Table 2 Annotation of cyanobacterial superoxide dismutases based on sequence and structure conservation.
From: Comparative analysis of cyanobacterial superoxide dismutases to discriminate canonical forms
Organisms | Accession no | Sequence length | Type of SOD in Database | Confirmed isoform from our study |
|---|---|---|---|---|
Prochlorococcus marinus AS9601 | YP_001009883 | 157 | putative Ni | NiSOD |
Prochlorococcus marinus CCMP1986 | NP_893411 | 156 | putative Ni | NiSOD |
Prochlorococcus marinus CCMP1375 | NP_875759 | 157 | Ni | NiSOD |
Prochlorococcus marinus MIT 9301 | YP_00109170 | 157 | putative Ni | NiSOD |
Prochlorococcus marinus MIT 9303 | YP_001017980 | 164 | putative Ni | NiSOD |
Prochlorococcus marinus MIT 9211 | ZP_01004940 | 140 | Ni | NiSOD |
Prochlorococcus marinus MIT 9312 | YP_397886 | 157 | putative Ni | NiSOD |
Prochlorococcus marinus MIT 9313 | NP_894173 | 157 | putative Ni | NiSOD |
Prochlorococcus marinus MIT 9515 | YP_001011769 | 157 | putative Ni | NiSOD |
Prochlorococcus marinus NATL1A | YP_0010155334 | 163 | putative Ni | NiSOD |
Prochlorococcus marinus NATL2A | YP_292055 | 163 | putative Ni | NiSOD |
Synechococcus sp. WH 8102 | NP_897719 | 157 | putative Ni | NiSOD |
Synechococcus sp. BL107 | ZP_01469600 | 157 | putative Ni | NiSOD |
| Â | ZP_01468043 | 198 | putative SOD | Cu/ZnSOD |
Synechococcus sp. CC9605 | YP_381196 | 157 | putative Ni | NiSOD |
| Â | YP_381812 | 178 | SOD precursor (Cu-Zn) | Cu/ZnSOD |
Synechococcus sp. CC9311 | YP_729969 | 175 | Cu/Zn | Cu/ZnSOD |
| Â | YP_730975 | 155 | Ni | NiSOD |
Synechococcus sp. CC9902 | YP_376992 | 175 | putative SOD | Cu/ZnSOD |
Crocosphaera watsonii WH 8501 | ZP_00517273 | 159 | Hypothetical protein | NiSOD |
| Â | ZP_00514026 | 254 | SOD | MnSOD |
Synechococcus elogatus PCC 6301 | YP_171447 | 229 | SOD | FeSOD |
| Â | 1613421A | 202 | SOD | FeSOD |
Synechococcus elogatus PCC 7942 | YP_399820 | 229 | SOD | FeSOD |
| Â | CAB57855 | 201 | SOD | FeSOD |
Synechococcus sp. JA-3-3Ab | YP_476221 | 199 | Fe | FeSOD |
Synechococcus sp. JA-2-3B'a(2–13) | YP_478710 | 199 | Fe | FeSOD |
Synechococcus sp. WH 7805 | ZP_01124652 | 199 | SOD | FeSOD |
| Â | ZP_01123794 | 174 | putative SOD | Cu/ZnSOD |
Synechococcus sp. WH 5701 | ZP_01084003 | 199 | SOD | FeSOD |
| Â | ZP_01084015 | 231 | Mn | MnSOD |
Synechococcus sp. RS9916 | ZP_01470625 | 199 | SOD | FeSOD |
| Â | ZP_01472508 | 177 | SOD precursor (Cu-Zn) | Cu/ZnSOD |
Gloeobacter violaceus PCC 7421 | NP_927273 | 203 | SOD | FeSOD |
| Â | NP_923628 | 316 | SOD | MnSOD |
| Â | NP_924927 | 233 | similar to SOD | NA* |
| Â | NP_925116 | 191 | similar to SOD | NA* |
Synechococcus sp. RS9917 | ZP_01081353 | 199 | SOD | FeSOD |
| Â | ZP_01080487 | 229 | SOD | MnSOD |
Cyanothece sp. CCY0110 | ZP_01728505 | 200 | SOD | FeSOD |
Thermosyncehococcus elongatus BP-1 | NP_682309 | 200 | SOD | FeSOD |
| Â | NP_680827 | 240 | SOD | MnSOD |
Lyngbya sp. PCC8106 | ZP_0169885 | 201 | SOD | Cu/ZnSOD |
| Â | ZP_01619231 | 201 | SOD | FeSOD |
Trichodesmium erythraeum IMS101 | YP_723986 | 254 | SOD | MnSOD |
| Â | YP_720765 | 159 | putative Ni | NiSOD |
Synechocystis sp. PCC 6803 | NP_441347 | 199 | Fe | FeSOD |
Spirulina platensis | AAQ22734 | 170 | Fe | FeSOD |
Plectonema boryanum UTEX 485 | AAA69954 | 199 | Fe | FeSOD |
| Â | AAA69953 | 239 | superoxide dismutase [Mn] precursor | MnSOD |
| Â | AAA69950 | 248 | Â | MnSOD |
| Â | AAA69952 | 206 | Â | MnSOD |
Leptolyngbya valderiana BDU20041 | AAX84682 | 144 | Mn | MnSOD |
Nostoc punctiforme PCC 73102 | ZP_00108516 | 200 | SOD | FeSOD |
| Â | ZP_00112125 | 249 | SOD | MnSOD |
| Â | ZP_00108372 | 259 | SOD | MnSOD |
Nostoc sp. PCC 7120 | Q8YSZ1 | 200 | Fe | FeSOD |
| Â | AAD51417 | 200 | Fe | FeSOD |
| Â | NP_484114 | 270 | SOD | MnSOD |
Anabaena variabilis ATCC 29413 | YP_321482 | 200 | Mn/Fe | FeSOD |
| Â | YP_321963 | 270 | Mn/Fe | MnSOD |
Nostoc linckia | AAL25194 | 200 | SOD | FeSOD |
Nostoc commune | AAF25009 | 200 | SOD | FeSOD |
Nostoc commune CHEN | AAV84021 | 200 | Fe | FeSOD |