Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

BMC Genomics

Table 3 List of probe sets which are differentially expressed between Golden Promise and Maythorpe under unstressed

Probe set ID	Putative Function	Rice Chr.	5' Rice Gene	Expression & Criteria	q-value %	fold change
Root Comparison
Contig8052_at	splicing factor PWI domain protein	3	29429795	MT up; R	25	2.0
Contig3842_at	LEA protein	5	28987287	MT up; RSM	25	34.3
Contig6165_at	CCT motif protein	5	29573293	MT up; RSM	25	9.9
Contig15475_at	reticuline oxidase precursor	6	20743699	MT up; R	25	6.1
Contig23396_at	expressed protein	-	-	MT up; RM	25	2.6
Contig6845_at	no hit	-	-	GP up; RS	25	2.9
Contig2510_at	expressed protein	-	-	GP up; R	25	1.8
Contig25937_at	structural maintenance of chr (SMC)	-	-	GP up; R	25	1.7
Contig17352_at	expressed protein	-	-	GP up; R	25	1.7
HVSMEn0005L15f	expressed protein	-	-	GP up; R	25	1.7
Contig18699_at	zinc finger (C3HC4-type RING finger)	1	39965630	GP up; R	25	1.8
Contig7273_s_at	replication protein A2	2	25402499	GP up; R	25	5.0
Contig25428_at	RPA 32 kDa	2	25402499	GP up; RM	25	2.6
Contig24975_at	expressed protein	4	10975293	GP up; R	25	1.7
Contig10006_at	AAA-type ATPase family protein	5	29015582	GP up; R	25	2.2
Shoot Comparison
Contig3842_at	LEA protein	5	28987287	MT up; SRYM	10	14.4
Contig6165_at	CCT motif protein	5	29573293	MT up; SRYM	10	5.7
EBro08_SQ004_F05	expressed protein	3	2102803	MT up; SY	10	2.8
HV_CEb0003E19r2	Auxin response factor 2	1	41022513	MT up; SM	10	2.0
Contig6845_at	no hit	-	-	GP up; SRM	10	10.7
S0000800234C01F1	expressed protein	7	5429853	GP up; SYM	10	3.3
HX01D24w_at	expressed protein	7	5429853	GP up; SYM	10	1.5
Contig1846_s_at	Catalase1	3	1769149	GP up; SY	10	3.4
Contig11254_at	floral homeotic protein (HUA1)	1	24805279	GP up; SY	10	3.4

R: root GP-MT comparison of 25-day old plants; S: shoot GP-MT comparison of 25-day old plants; Y: shoot GP-MT comparison of 10-day old plants; M: multiple

ISSN: 1471-2164