Table 3 Summary of the features of co-occurring motif pairs.
Feature | Class 1 | Class 2 | Class 3 |
|---|---|---|---|
Number of pairs | 248 | 4,020 | 4,186 |
Pattern on the heat maps | Around TSS | Scattered diagonally | uncharacterized |
Dominant peak types of single motifs | LP/SP | NP | NP |
Correlation with CpG ratio | 0.38 | -0.40 | 0.02 |
Expression preference | Ubiquitous | Specific | Specific |
Typical domains of corresponding TFs | Dimerization, Basic, Alpha-helical, [SG]-rich | [APSTQ]-rich | miscellaneous |