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Table 2 SIDER elements present in the L. infantum chromosome 20

From: The SIDER2 elements, interspersed repeated sequences that populate the Leishmania genomes, constitute subfamilies showing chromosomal proximity relationship

Namea

Subfamily

Size (%GC)

79-bp signatureb

20-315r

N

477 (66.3)

2b

20-9815r

N

554 (66.3)

2b

20-26129r

N

526 (65.8)

2b

20-38171r*

N

356 (67.4)

 

20-104446d

O

576 (65.8)

2a

20-112062r

O

571 (65.5)

2a

20-121152d*

O

425 (65.2)

 

20-133376d

O

661 (64.2)

2a

20-172973d

O

651 (64.7)

2a

20-208609r

 

384 (63.8)

2b

20-248078r

 

378 (61.4)

2b

20-334521d

 

221 (58.8)

 

20-418908d

 

466 (65.7)

2a

20-432767r

P

561 (65.4)

 

20-441039d

P

592 (65.0)

 

20-449285d

P

603 (65.2)

 

20-483061r

Q

466 (67.4)

 

20-510191r*

Q

253 (70.0)

 

20-512317d

R

451 (66.3)

2b

20-517565r

Q

334 (71.9)

 

20-520085d

R

444 (66.4)

2b

20-543749d

R

455 (65.5)

2b

20-550589d

R

455 (65.5)

2b

20-575257d

Q

468 (68.6)

2b

20-609548d

S

1270 (70.0)

 

20-616384d

S

1270 (69.8)

 

20-716639r

 

556 (58.6)

 
  1. aThe elements are named with the chromosome number (i.e., 32) and the position in the chromosome, according to the contig LinJ20_20070420_V3 sequence; d and r denote that the element is located in the plus or minus DNA strand, respectively.
  2. bThe presence of significant BLASTN matches with the "79-bp signature" LmSIDER2a (2a) or LmSIDER2b (2b) is indicated.
  3. *Truncated element.