From: Basal DNA repair machinery is subject to positive selection in ionizing-radiation-resistant bacteria
Orthologs | Function | (Ka/Ks)b | D value (Tajima test)b |
---|---|---|---|
DNA polymerase | |||
DR_0467 Dgeo_1609 Krad_R0056 Rxyl_0486 | Hypothetical DNA polymerase♠ | n.a.c | -1.779 |
DR_0507 Dgeo_0255 Krad_3187 Rxyl_1096 | DNA polymerase III, α subunit* | n.a. | -1.725 |
DR_0856 Dgeo_1818 Krad_3247 Rxyl_2984 | DNA polymerase III, ε subunit◆ | 2.81 | |
DR_1244 Dgeo_0745 Krad_3423 Rxyl_1518 | Putative DNA polymerase III, δ subunit◆ | 1.68 | |
DR_1707 Dgeo_1666 Krad_2951 Rxyl_2025 | DNA-directed DNA polymerase* | 3.15 | |
DR_1751 Dgeo_1556 Krad_1521 Rxyl_0503 | DNA polymerase-related protein◆ | n.a. | -1.744 |
DR_2410 Dgeo_2135 Krad_R0007 Rxyl_2444 | DNA polymerase III, τ/γ subunit* | 2.3 | |
Replication complex | |||
DR_0100 Dgeo_0165 Krad_4338 Rxyl_0045 | Single-stranded DNA-binding protein* | n.a. | -1.872 |
DR_0549 Dgeo_2037 Krad_4333 Rxyl_0852 | Replicative DNA helicase♠ | n.a. | -1.539 |
DR_0601 Dgeo_R0043 Krad_3361 Rxyl_1502 | DNA primase* | n.a. | -1.770 |
DR_0906 Dgeo_0546 Krad_0006 Rxyl_0005 | DNA gyrase, subunit B* | 3.4 | |
DR_1374 Dgeo_2001 Krad_0487 Rxyl_1964 | DNA topoisomerase I* | 3.13 | |
DR_1913 Dgeo_1016 Krad_0007 Rxyl_0006 | DNA gyrase, subunit A* | 3.48 | |
Other DNA-associated proteins | |||
DR_0120 Dgeo_2345 Krad_1409 Rxyl_1396 | smf protein♠ | 1.87 | |
DR_0289 Dgeo_0248 Krad_0422 Rxyl_2676 | Endonuclease III♠ | 2.82 | |
DR_0440 Dgeo_0327 Krad_3056 Rxyl_1322 | Holliday junction resolvase* | 2.06 | |
DR_0493 Dgeo_0442 Krad_1377 Rxyl_2433 | Formamidopyrimidine-DNA glycosylase◆ | 2.37 | |
DR_0596 Dgeo_0404 Krad_3053 Rxyl_1324 | Holliday junction DNA helicase* | n.a. | -1.789 |
DR_1089 Dgeo_1620 Krad_0004 Rxyl_0004 | RecF protein* | n.a. | -1.342 |
DR_1105 Dgeo_1212 Krad_0603 Rxyl_2178 | DNA repair protein* | 2.61 | |
DR_1274 Dgeo_0726 Krad_3054 Rxyl_1323 | Holliday junction binding protein♠ | 1.88 | |
DR_1354 Dgeo_1124 Krad_2935 Rxyl_2010 | Excinuclease ABC, subunit C* | n.a. | -1.411 |
DR_1477 Dgeo_1194 Krad_3147 Rxyl_1453 | DNA repair protein♠ | 2.08 | |
DR_1532 Dgeo_0545 Krad_1067 Rxyl_0909 | Transcription-repair coupling factor* | 3.05 | |
DR_1771 Dgeo_0694 Krad_2940 Rxyl_2016 | Excinuclease ABC, subunit A♠ | n.a. | -1.678 |
DR_1775 Dgeo_0868 Krad_0757 Rxyl_0825 | DNA helicase II* | n.a. | -1.450 |
DR_1916 Dgeo_1139 Krad_1368 Rxyl_1371 | DNA helicase RecG* | 3.35 | |
DR_1921 Dgeo_0824 Krad_2554 Rxyl_0449 | Exonuclease SbcD, putative◆ | 2.36 | |
DR_1922 Dgeo_0823 Krad_2553 Rxyl_0448 | Exonuclease SbcC♠ | 1.82 | |
DR_1949 Dgeo_1623 Krad_1405 Rxyl_1394 | Ribonuclease HII♠ | n.a. | -1.642 |
DR_2074 Dgeo_1660 Krad_3154 Rxyl_1309 | Putative 3-methyladenine DNA glycosylase♣ | 3.25 | |
DR_2275 Dgeo_1890 Krad_2942 Rxyl_2021 | Excinuclease ABC, subunit B* | n.a. | -1.767 |
DR_2285 Dgeo_0019 Krad_0599 Rxyl_2229 | A/G-specific adenine glycosylase* | 1.85 | |
DR_2340 Dgeo_2138 Krad_1492 Rxyl_1423 | RecA protein* | n.a. | -1.179 |
DR_2584 Dgeo_0107 Krad_4325 Rxyl_1215 | DNA-3-methyladenine glycosidase II, putative* | n.a. | -1.607 |