Transcriptome analysis of a respiratory Saccharomyces cerevisiae strain suggests the expression of its phenotype is glucose insensitive and predominantly controlled by Hap4, Cat8 and Mig1

Table 3 Biologically-verified data on transcription factors that act on genes also found in Additional file 1: transcript dependence on Cat8 and Adr1.

ORF	GENE	FACTOR CHANGE IN GENE EXPRESSION FROM V5 TO V5.TM6*P^a	FACTOR CHANGE IN GENE EXPRESSION USING DATA FROM CHROMATIN IMMUNOPRECIPITATION FOR Cat8^b[25], mRNA EXPRESSION RATIOS FOR WT/Δcat8^c[16] AND IMMUNOPRECIPITATION DATA FOR Adr1^d [25].
Gluconeogenesis
YLR377C	FBP1	5.3	5.0^b; MAX^c
YKR097W	PCK1	6.9	7.7^b; 151^c
Alternative carbon source utilization
YPL061W	ALD6	2.3	5.2^b; 8^c
YML054C	CYB2	10.1	7.4^d
YHL032C	GUT1	6.2	3.7^d
YIL155C	GUT2	3.3	4.6^d
TCA cycle
YGR244C	LSC2	2.9	5.2^d
Glyoxylate cycle
YCR005C	CIT2	2.2	1.7^c
YLR174W	IDP2	4	2.9^b; 23^c
YOL126C	MDH2	3	12.7^b; 3.6^c
YNL117W	MLS1	3.5	8.9^b; 79^c
Respiratory chain
YPR151C	SUE1	3.7	4.4^d
Plasma membrane transport
YOR348C	PUT4	5.8	2.7^b; 6.1^c; 2.0^d
YDR536W	STL1	21.7	4.4^c
Mitochondrial transport
YNR002C	ATO2	3.8	0.33^c
YML042W	CAT2	2.6	2.8^b; 2.4^c
YOR100C	CRC1	2.2	8.1^c
YKL217W	JEN1	10.3	3.6^b; 10^c; 10.5^d
YPL134C	ODC1	6.3	3.2^b
YJR095W	SFC1	18.3	6.2^b; MAX^c

The table is arranged as for Table 2. Factor changes denoted '^a' are from Additional file 1, '^b' refer to chromatin immunoprecipitation data for Cat8 [25], '^c' refer to mRNA expression ratios for wt/Δcat8 [16] and '^d' refer to chromatin immunoprecipitation data for Adr1 [25].

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