Transcriptome analysis of a respiratory Saccharomyces cerevisiae strain suggests the expression of its phenotype is glucose insensitive and predominantly controlled by Hap4, Cat8 and Mig1

Table 4 Biologically-verified data on transcription factors that act on genes also found in Additional file 1: transcript dependence on Mig1.

ORF	GENE	FACTOR CHANGE IN GENE EXPRESSION FROM V5 TO V5.TM6*P^a	Mig1 BINDING VERIFIED USING DATA FROM PROTEIN-BINDING MICROARRAY^b[27]AND *IN VIVO*^c[26]ANALYSES
Glycolysis
YFR053C	HXK1	9	b,c
Gluconeogenesis
YLR377C	FBP1	5.3	b
Alternative carbon source utilization
YHL032C	GUT1	6.2	b
YIL162W	SUC2	6.8	c
Glyoxylate cycle
YCR005C	CIT2	2.2	b
Plasma membrane transport
YEL069C	HXT13	3.9	b,c
YDL245C	HXT15	3.2	c
YBR298C	MAL31	3.1	b
Mitochondrial transport
YNR002C	ATO2	3.8	b
YKL217W	JEN1	10.3	b
YPL134C	ODC1	6.3	b
Transcriptional regulation
YDR516C	EMI2	3.6	b,c
YEL066W	HPA3	2.2	b
Other
YEL070W	DSF1	9.4	b,c
YGR243W	FMP43	4.9	b

The table is arranged as for Table 2. Factor changes denoted '^a' are from Additional file 1. Mig1 binding was verified using data from protein-binding microarray [27] studies denoted '^b' and in vivo [26] analyses denoted '^c' although no factor changes were indicated in those studies.

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