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Table 3 I. scapularis differentially expressed genes after subolesin knockdown.

From: Evidence of the role of tick subolesin in gene expression

Clone IDa

Accession number, name and speciesb

Fold change (6 dpi)c

SD (6 dpi)d

Fold change (9 dpi)c

SD (9 dpi)d

LibPlateC1_wellB12

[Genbank:AAT92189] KUN-6 (Ixodes pacificus)

-1.1196

0.2519

-2.2057

0.3109

LibPlateC1_wellB6

[Genbank:AAZ29240] copper/zinc superoxide dismutase (Macrobrachium rosenbergii)

-2.7645

0.5455

-2.5136

0.2930

LibPlateC1_wellD9

[Genbank:AAY66901] histone 2B (Ixodes scapularis)

-1.5922

1.5332

-2.5298

0.9579

LibPlateC1_wellE6

[Genbank:AAY66498] putative secreted salivary WC peptide (Ixodes scapularis)

1.2320

1.4160

-5.2598

1.3686

LibPlateC1_wellF10

[Genbank:AAY66817] anticoagulant Salp9-like (Ixodes scapularis)

-2.0332

0.2959

-1.2037

0.1124

LibPlateC1_wellG12

[Genbank:AAZ29240] copper/zinc superoxide dismutase (Macrobrachium rosenbergii)

-1.6426

0.2527

-2.2118

0.4974

LibPlateC1_wellH10

No homology found

-1.8346

0.7216

-2.0350

1.0821

LibPlateC1_wellH4

No homology found

-1.6161

0.4640

-2.0602

0.5671

LibPlateC2_wellB11

[Genbank:AAY66498] putative secreted salivary WC peptide (Ixodes scapularis)

-1.8612

0.1952

-2.1981

0.1664

LibPlateC2_wellB12

No homology found

-1.1313

0.1588

-2.1133

0.2023

LibPlateC2_wellD5

No homology found

-1.6882

0.0965

-2.2689

0.2158

LibPlateC2_wellE3

[Genbank:AAY66498] putative secreted salivary WC peptide (Ixodes scapularis)

-1.0794

0.2033

-2.2673

0.2302

LibPlateC2_wellG1

[Genbank:AAM93633|AF483711_1] putative secreted protein (Ixodes scapularis)

-1.4409

0.2000

-3.5351

0.3250

LibPlateC3_wellB10

[Genbank:AAH67494] HIST1H3I protein (Homo sapiens)

-2.0111

0.2174

-2.3299

0.4323

LibPlateC3_wellB8

No homology found

-2.0438

1.5307

-1.3772

0.5537

LibPlateC3_wellC7

[Genbank:AAZ29240] copper/zinc superoxide dismutase (Macrobrachium rosenbergii)

-4.1699

0.1770

-3.1053

0.0638

LibPlateC3_wellD7

[Genbank:AAZ29240] copper/zinc superoxide dismutase (Macrobrachium rosenbergii)

-2.5487

0.1977

-2.1210

0.4374

LibPlateC3_wellE2

[Genbank:XP_624446.2] Predicted similar to ruby CG11427-PA isoform 2 (Apis mellifera)

-2.4606

1.6665

-1.0115

0.3122

LibPlateC3_wellE9

[Genbank:AAZ29240] copper/zinc superoxide dismutase (Macrobrachium rosenbergii)

-3.4248

0.3717

-2.0792

0.2988

LibPlateC3_wellF10

[Genbank:AAM93633|AF483711_1] putative secreted protein (Ixodes scapularis)

-1.3583

0.2449

-3.9731

0.1679

LibPlateC3_wellF11

[Genbank:AAM93633|AF483711_1] putative secreted protein (Ixodes scapularis)

-1.0215

0.1441

-2.9246

0.1172

LibPlateC3_wellG5

[Genbank:AAM93633|AF483711_1] putative secreted protein (Ixodes scapularis)

-1.1451

0.2311

-3.7711

0.1890

LibPlateC4_wellB1

No homology found

-1.7450

0.6400

-2.2268

0.3409

LibPlateC4_wellB10

[Genbank:AAQ01562] von Willebrand factor (Ixodes ricinus)

1.1202

0.3737

-3.9449

0.2800

LibPlateC4_wellB5

[Genbank:ABD83654] hemelipoglycoprotein precursor (Dermacentor variabilis)

-1.9958

0.5689

-3.5813

0.6757

LibPlateC4_wellB7

[Genbank:AAP84098] ML domain-containing protein (Ixodes ricinus)

-1.5703

0.3164

-4.5599

0.4105

LibPlateC4_wellB8

No homology found

-2.6551

0.3564

-3.5944

0.3325

LibPlateC4_wellC1

[Genbank:AAY66502] secreted salivary gland protein (Ixodes scapularis)

1.0009

0.2427

-2.2922

0.3518

LibPlateC4_wellC2

No homology found

-1.0286

0.0610

-2.0853

0.1338

LibPlateC4_wellC6

No homology found

-1.1217

0.1682

-2.7104

0.1235

LibPlateC4_wellD3

No homology found

1.6859

0.2075

2.6468

0.1954

LibPlateC4_wellD4

[Genbank:XP_974124] PREDICTED: similar to CG2972-PA (Tribolium castaneum)

-2.1335

0.2315

-2.6578

0.3642

LibPlateC4_wellF6

[Genbank:BAE53722] aspartic protease (Haemaphysalis longicornis)

-1.4881

0.2385

-4.8576

0.3690

LibPlateC4_wellG3

[Genbank:AAY66629] putative secreted salivary protein (Ixodes scapularis)

1.0601

0.1625

2.0049

0.1481

LibPlateC4_wellG4

[Genbank:XP_794044] Predicted similar to Endoplasmic reticulum-golgi intermediate

-2.2835

0.2324

-1.7916

0.5510

LibPlateC4_wellH4

[Genbank:AAY66660] putative salivary secreted protein (Ixodes scapularis)

-1.5502

0.2177

-5.1239

0.2056

LibPlateC4_wellH6

[Genbank:AAY66982] cyclophilin A (Ixodes scapularis)

-1.0545

0.0098

2.0388

0.2239

LibPlateR1_wellG3

No homology found

1.2792

0.2664

2.2118

0.1902

LibPlateR1_wellH7

[Genbank:AAY66764] putative secreted salivary protein (Ixodes scapularis)

1.2470

0.0447

-2.0598

0.0708

LibPlateR2_wellB2

[Genbank:AAY66713] putative secreted salivary protein (Ixodes scapularis)

1.4186

0.2490

2.2141

0.2145

LibPlateR2_wellF10

[Genbank:AAK97818|AF209915_1] 16 kDa salivary gland protein A (Ixodes scapularis)

-1.8100

0.4667

-2.4275

0.3690

LibPlateR2_wellG7

[Genbank:AAY66713] putative secreted salivary protein (Ixodes scapularis)

1.4101

0.1056

2.1495

0.1347

LibPlateR3_wellA7

No homology found

-1.0338

0.1570

2.0213

0.1464

LibPlateR4_wellA3

No homology found

-1.0990

1.1277

-3.4438

1.6338

  1. aClone ID identifies the clone based on SSH Library Plate_well.
  2. bName: This output only contains descriptions of the top blast hit (most significant alignment based on E value).
  3. cFold change is of the global normalized ratio (log2(635/532)) of background-corrected means averaged between replicates (determined from valid spots only). Only genes down-regulated (negative values) and up-regulated (positive values) after subolesin knockdown by at least two fold at 6 or 9 dpi were considered.
  4. dSD is the standard deviation determined from the normalized average log2 ratio (determined from valid spots only).
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BMC Genomics

ISSN: 1471-2164

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