Table 2 The breakdowns of TF genes in each of the nematode species genomes based on various search categories.
Search method | Number of TF genes | ||
|---|---|---|---|
| Â | C. elegans | C. briggsae | C. remanei |
GO term-based | 707 | ND | NA |
Orthologs (InParanoid and reciprocal BLAST) | ND | 713 | 703 |
Manual curation | 281 | NA | NA |
HMM alignments | ND | 282 | 390 |
TOTAL: | 988 | 995 | 1093 |