Table 1 Aluminum stress-regulated genes from wheat identified by microarray profiling
Gene number/ Response typea | ProbesetIDsb | Tentative annotationc | Representative GenBank/ Closest TIGR TC ID | Reference/ fold changed |
|---|---|---|---|---|
1- Stress | Ta.25382.1.S1_at | Putative glutathione S-transferase | CD452690/TC271794 | [20]/11.4 |
2- Pathogen | Ta.192.1.S1_at | WCI-5 | U32431.1/TC236905 | 8.4 |
3- Unknown | Ta.12921.1.S1_x_at | Similar to XP_467711.1 | CA601406/TC239727 | 7.9 |
4- Stress | Ta.5024.1.S1_x_at | Wali6 | L28009.1/TC252513 | [64]/7.3 |
5- Stress | Ta.5557.1.S1_x_at | Putative germin/oxalate oxidase | CD869243/TC250530 | |
6- Unknown | Ta.12671.1.S1_a_at | Moderately similar to NP_909983.1 | CK194385/TC265258 | 6.3 |
7- Unknown | Ta.8907.1.S1_at | Weakly similar to XP_481678.1 | CD871652/TC257163 | 6.1 |
8- Pathogen | Ta.14071.2.S1_a_at | Putative nodulin MtN21 | CA642218/TC236471 | 6.0 |
9- Unknown | Ta.13875.1.S1_at | Putative cyclin-dependent kinase 5 activator 2 precursor | AL830660/TC254582 | 5.9 |
10- Pathogen | Ta.231.1.S1_x_at | Secretory protein (WAS-2) | AF079526.1/TC234692 | 5.8 |
11- Pathogen | Ta.2784.1.A1_at | Chi 1 mRNA for chitinase 1 | AB029934.1/TC251831 | 5.7 |
12- Unknown | Ta.25140.1.S1_at | Moderately similar to XP_477866.1 integral membrane protein-like | CD866293/TC268024 | 5.6 |
13- Stress | Ta.29814.1.S1_at | Class III peroxidase 15 precursor | CK213308/TC248113 | [19]/5.5 |
14- Signalling | Ta.11671.1.S1_at | Putative heat shock transcription factor | BQ170572/TC268778 | 5.4 |
15- Stress | Ta.21267.1.S1_s_at | Wali3 | CA694095/TC250582 | [18]/5.4 |
16- Unknown | TaAffx.7032.1.S1_at | Unknown | CA670339 | 5.4 |
17- Unknown | Ta.14129.1.S1_at | Weakly similar to NP_181673.1 proline-rich family protein | BQ789170/TC253690 | 5.3 |
18- Stress | TaAffx.27822.1.S1_at | Wali5 | CA669899/TC234419 | [18]/5.3 |
19- Stress | Ta.22673.1.S1_s_at | Germin GF-2.8 precursor; oxalate oxidase | M21962.1/TC255645 | [19]/5.3 |
20- Metabolism | TaAffx.118543.1.A1_at | Putative phragmoplastin (Oryza sativa) | BJ320269/TC288239 (rice) | 5.2 |
21- Stress | Ta.962.1.A1_at | Class III peroxidase 15 precursor | BQ160711/TC247326 | [19]/5.2 |
22- Stress | Ta.2793.1.S1_at | Tamdr1 mRNA; multidrug resistance protein 1 (ABC transporter) | AB055077.1/TC275845 | [21]/5.1 |
23- Pathogen | Ta.231.1.S1_at | Secretory protein (WAS-2) | AF079526.1/TC234692 | 5.1 |
24- Stress | Ta.28233.1.S1_at | Putative iron/ascorbate-dependent oxidoreductase | CA599187/TC246980 | 5.1 |
25- Stress | Ta.18203.1.S1_at | Blue copper-binding protein | AF031195.1/TC265708 | [20]/5.0 |
26- Unknown | Ta.975.2.S1_at | Moderately similar to XP_475934.1 | CK217120/TC246830 | 5.0 |
27- Unknown | Ta.30765.1.S1_at | Weakly similar to XP_479604.1 | CN011347/TC257484 | 5.0 |
28- Pathogen | Ta.8574.2.A1_at | Putative xylanase inhibitor TAXI-III | BQ162077/TC249173 | 4.8 |
29- Stress | Ta.24553.1.A1_at | Oxalate oxidase precursor (OXO1 gene) | CA662341/TC264833 | [19]/4.7 |
30- Stress | Ta.11025.1.A1_at | FAD-binding domain-containing protein; putative arabinono-lactone oxidase (D-erythroascorbate) | BQ168402/TC235458 | 4.7 |
31- Unknown | Ta.5824.1.S1_s_at | Moderately similar to XP_467711.1 | CA693256/TC263060 | 4.7 |
32- Metabolism | Ta.653.1.S1_at | Putative xyloglucan endo-1,4-beta-D-glucanase | CK196945/TC253973 | [66]/4.6 |
33- Unknown | TaAffx.42638.1.S1_at | Unknown | BQ802968/TC253690 | 4.5 |
34- Pathogen/signalling | Ta.4479.1.S1_at | Putative disease resistance protein; leucine-rich repeat family protein | CN011595/TC262862 | 4.4 |
35- Stress | Ta.21350.1.S1_x_at | Wali5 | L11882.1/TC234419 | [18]/4.4 |
36- Stress | Ta.27945.1.S1_x_at | ABA responsive protein; putative glucosyltransferases (pfam domain) (cell wall metabolism) | CK216098/TC248224 | 4.3 |
37- Pathogen/signalling | Ta.4479.2.S1_a_at | Putative disease resistance protein; leucine-rich repeat family protein/putative protein kinase | CA735391/TC262862 | 4.3 |
38- Unknown | Ta.15199.1.S1_at | Weakly similar to NP_911238.1 | CA653051/TC260490 | 4.3 |
39- Stress | Ta.30711.1.S1_x_at | Wali5; putative proteinase inhibitor (wrsi5-1) | AY549888.1/TC234467 | [18]/4.3 |
40- Signalling | Ta.30908.1.S1_at | Putative EF-hand Ca2+-binding protein CCD1 | CN013064/TC254944 | 3.9 |
41- Signalling | Ta.19062.1.S1_at | Putative EF-hand Ca2+-binding protein CCD1 | CA646724/TC254944 | 3.8 |
42- Pathogen | TaAffx.15836.1.S1_at | Harpin induced protein pfam domain, hypersensitive response | BQ803322/TC300996 (rice) | 3.7 |
43- Signalling | TaAffx.110751.1.S1_s_at | Putative EF-hand Ca2+-binding protein CCD1 | CA685090/TC254944 | 3.7 |
44- Stress | Ta.6797.1.A1_at | Putative S-adenosylmethionine decarboxylase 2 | BJ311153/TC261365 | 3.7 |
45- Stress | Ta.105.1.S1_at | Wali3 | L11881.1/TC268347 | [18]/3.6 |
46- Metabolism | Ta.4199.1.S1_a_at | Putative arabinoxylan arabinofuranohydrolase | CK199568/TC234741 | 3.5 |
47- Unknown | Ta.4343.1.S1_x_at | Weakly similar to NP_196028.2 | CK212675/TC251862 | 3.5 |
48- Unknown | Ta.30942.1.S1_a_at | Unknown | BE515762/TC255181 | 3.4 |
49- Pathogen | Ta.392.2.S1_at | B2 protein; DCD (development and cell death) Interpro domain IPR013989 | CA659319/TC234641 | 3.4 |
50- Signalling | TaAffx.128621.1.S1_at | Putative EF-hand Ca2+-binding protein; calmodulin-like | CK200510/TC269114 | 3.4 |
51- Metabolism | Ta.6099.1.S1_at | Nitropropane dioxygenase-like (pfam domain) | CA667895/TC235667 | 3.4 |
52- Pathogen | Ta.13701.1.S1_at | Benzoyl coenzyme A: benzyl alcohol benzoyl transferase; Putative hypersensitivity-related (hsr)protein | BQ280458/TC270357 | 3.4 |
53- Unknown | TaAffx.10772.1.A1_at | Unknown | CK213044/TC241105 | 3.4 |
54- Signalling | Ta.15067.1.S1_at | Putative EF-hand Ca2+-binding protein CCD1 | CD876309/TC260557 | 3.4 |
55- Signalling | Ta.15067.1.S1_x_at | Putative EF-hand Ca2+-binding protein CCD1 | CD876309/TC260557 | 3.4 |
56- Unknown | Ta.24654.1.S1_at | Unknown | CA605778/TC252436 | 3.4 |
57- Unknown | Ta.14221.1.S1_s_at | Weakly similar to XP_470656.1 | BQ838103/TC258780 | 3.3 |
58- Unknown | Ta.21307.1.S1_x_at | Putative peroxidase | CK199589/TC249039 | [19]/3.3 |
59- Unknown | TaAffx.22704.1.S1_at | Putative GABA-specific permease | CA746306/TC314548 (rice) | 3.2 |
60- Signalling | Ta.8914.1.S1_at | Putative serine/threonine protein kinase | BQ162624/TC248336 | 3.2 |
61- Pathogen | Ta.392.2.S1_x_at | B2 protein; DCD (development and cell death) Interpro domain IPR013989 | CA659319/TC234641 | 3.1 |
62- Metabolism | Ta.21166.1.S1_at | Putative shikimate kinase chloroplast precursor | CD492089/TC236265 | 3.1 |
63- Signalling | TaAffx.10874.1.S1_at | Putative Receptor protein kinase-like protein | CA609878/TC238909 | 3.1 |
64- Unknown | TaAffx.28156.1.S1_at | Unknown | CA664383/TC263848 | 3.1 |
65- Metabolism | Ta.29951.1.S1_at | Putative pyruvate dehydrogenase E1 alpha subunit, mitochondrial | CD903633/TC249785 | 3.0 |
66- Signalling | TaAffx.110751.1.S1_x_at | Putative EF-hand Ca2+-binding protein CCD1 | CA685090/TC254944 | 3.0 |
67- Unknown | TaAffx.10772.1.A1_s_at | Unknown | CK213044/TC241105 | 2.9 |
68- Unknown | Ta.9255.1.S1_at | Weakly similar to NP_523812.1; Leucine-rich protein | CK208205/TC265940 | 2.9 |
69- Unknown | Ta.12565.3.S1_a_at | Putative ubiquitin-associated (UBA) protein | CA705730/TC247679 | 2.8 |
70- Stress | Ta.24150.1.S1_at | Glutathione-S-transferase 19E50 | AY064481.1/TC266491 | [20]/2.8 |
71- Pathogen | Ta.13785.1.S1_at | Xylanase Inhibitor Protein (Xip-I) | CK198324/TC264928 | 2.7 |
72- Metabolism | Ta.10549.1.A1_x_at | Alternative oxidase 3 | CA609877/TC267601 | [67]/2.7 |
73- Pathogen | Ta.392.1.S1_at | B2 protein; DCD (development and cell death) Interpro domain IPR013989 | CK200130/TC234641 | 2.7 |
74- Pathogen | Ta.392.3.A1_s_at | B2 protein; DCD (development and cell death) Interpro domain IPR013989 | CK164089/TC234641 | 2.7 |
75- Unknown | Ta.4674.1.S1_s_at | Unknown | BJ269896/TC243760 | 2.6 |
76- Pathogen | Ta.392.1.S1_x_at | B2 protein; DCD (development and cell death) Interpro domain IPR013989 | CK200130/TC234641 | 2.6 |
77- Metabolism | Ta.4199.2.S1_at | Putative arabinoxylan arabinofuranohydrolase | CA601651/TC234741 | 2.6 |
78- Unknown | Ta.28879.1.S1_at | Protein phosphatase type 2C | BJ306387/TC263663 | 2.5 |
79- Unknown | Ta.28879.2.S1_x_at | Protein phosphatase type 2C | CA744010/TC263663 | 2.4 |
80- Unknown | Ta.25514.1.S1_s_at | Polygalacturonase activity (GO:0004650) | CA663409/TC269433 | 2.3 |
81- Unknown | Ta.12879.1.S1_at | Moderately similar to XP_463452.1 | CD490901/TC241688 | 0.3 |
82- Pathogen | Ta.7963.2.S1_x_at | Putative disease resistance response protein | CK215257/TC251022 | 0.2 |
83- Stress | Ta.22968.1.S1_at | Putative lipid transfer protein | CA614519/TC247557 | [67]/0.2 |