Table 2 Genes associated with Al tolerance in wheat, as identified by microarray profiling
A: Constitutively expressed genes associated with Al tolerance. | ||||
|---|---|---|---|---|
Gene number response typea | Probeset IDsb | Annotationc | Representative GenBank/ Closest TIGR TC ID | Reference/fold changed |
84- Stressa | Ta.30659.1.S1_at | Almt1-1 mRNA for aluminum-activated malate transporter | AB081803.1/TC275842 | [33]/5.4 |
85- Unknown | TaAffx.11437.1.S1_at | Unknown | CD916477/TC237550 | 3.1 |
86- Unknown | Ta.6595.1.S1_at | Weak similarity to pinin | CA680476/TC239245 | 0.4 |
87- Metabolism | Ta.9190.2.S1_at | Putative Anaphase promoting complex subunit 10 | BJ321280/TC237861 | 0.3 |
88- Unknown | Ta.7249.1.S1_at | Unknown | CA713200/TC238862 | 0.2 |
89- Signalling | TaAffx.16664.1.A1_at | F-box containing domain (IPR001810) and F-Box associated domain (IPR006527); Ubiquitination | CK205523/TC255586 | 0.2 |
B: Up-regulated genes associated with Al tolerance. | ||||
Response | Probeset IDsa | Annotationa | Representative GenBank/ Closest TIGR TC ID | Reference/fold changed |
90- Unknown | Ta.23271.1.S1_s_at | unknown | CA680274/TC249675 | 7.6 |
91- Stress | Ta.8545.1.S1_at | Glutathione S-transferase (GST) | BQ162041/TC259746 | 5.7 |
92- Pathogen | Ta.21314.1.S1_x_at | Similar to disease resistance response protein | CA669694/TC266782 | 5.2 |
93- Unknown | TaAffx.26343.1.S1_at | Unknown | CA689752/TC257163 | 4.9 |
94- Metabolism | Ta.8447.1.S1_a_at | Putative cytochrome P450 monooxygenase | CA669038/TC236876 | [67]/4 |
95- Pathogen | Ta.24632.1.S1_at | Pathogen response serine-type endopeptidase inhibitor activity; putative protease inhibitor | BE405372/TC248320 | 4 |
96- Stress | Ta.3118.1.S1_at | Glutathione S-transferase | BE515437/TC238392 | 3.2 |
97- Unknown | TaAffx.86317.1.S1_at | Yippee-like protein IPR004910; role in cell division | CA611222/TC268232 | 3.2 |
98- Pathogen | Ta.24632.1.S1_x_at | Pathogen response serine-type endopeptidase inhibitor activity; putative protease inhibitor | BE405372/TC248320 | 3.1 |
99- Unknown | Ta.10326.1.S1_at | Unknown | BJ244180/TC238059 | 3.1 |
100- Unknown | Ta.14224.1.S1_at | Weak similarity to Protamine 1B or Zinc Knuckle domain | CK214385/TC252792 | 3.1 |
101- Metabolism | Ta.28890.1.A1_s_at | Fructose-1,6-bisphosphatase isozyme 2 (F1,6-BP) | CA686703/TC235271 | 2.9 |
102- Pathogen | Ta.24632.1.S1_a_at | Pathogen response serine-type endopeptidase inhibitor activity; putative protease inhibitor | BE405372/TC248320 | 2.9 |
103- Unknown | Ta.13302.1.S1_at | Unknown | BQ801428/TC258348 | 2.5 |
104- Unknown | Ta.23097.1.S1_x_at | Weak similarity to Adhesive/ proline-rich-like protein | CA699090/TC241038 | 2.4 |
105- Unknown | Ta.29761.1.A1_at | Similar to At2g31940 | AJ609795/TC243334 | 2.4 |
106- Metabolism | Ta.4084.1.S1_at | Putative cellulose synthase-like protein OsCslE1 (cell wall metabolism) | BJ264002/TC253821 | 2.4 |
107- Signalling | TaAffx.12876.1.S1_at | Putative C2H2 type zinc finger transcription factor | BJ220837/TC275754 | 2.1 |
108- Pathogen | Ta.7883.1.S1_x_at | Putative disease resistance response protein | CK212322/TC267223 | 0.2 |