Figure 1
From: Haplotype block partitioning as a tool for dimensionality reduction in SNP association studies
Linkage disequilibrium on the studied region and block recognition. Linkage Disequilibrium map of 500 SNPs spanning 2 Mb of the q11 region on Chromosome 14, based on the 45 Japanese subjects in the HapMap project [21]. We selected SNPs having a minor allele frequency of at least 5% and showing evidence of Hardy Weinberg Equilibrium. A. The upper triangle shows the values for |D'|, and the lower triangle shows the blocks estimated using MATILDE on the |D'| values. B. The upper triangle shows the r2 values, and the lower triangle shows the blocks estimated using MATILDE on the r2 values. A1. A zoom on the last 100 SNPs of panel A. B1. A zoom on the last 100 SNPs of panel B.