Table 3 Selected UCR Motifs
From: Comparative genomics of small RNA regulatory pathway components in vector mosquitoes
| Â | Â | Â | Â | Proportion of UCRs with Motif | Median Motifs per UCR | ||||
|---|---|---|---|---|---|---|---|---|---|
Motif | FET p value | BH | Enriched over genome? | miRNA | siRNA | PIWI | miRNA | siRNA | PIWI |
NFkB2 | not sig.^ | not sig. | No | 0.188 | 0.250 | 0.100 | 1.0 | 1.0 | 1.0 |
NFkB4 | not sig. | not sig. | No | 0.313 | 0.438 | 0.460 | 1.0 | 1.0 | 1.0 |
NFkB7* | not sig. | not sig. | No | 0.188 | 0.375 | 0.280 | 1.0 | 1.0 | 1.0 |
BRC_Z1 | not sig. | not sig. | No | 0.813 | 0.313 | 0.540 | 1.0 | 1.0 | 1.0 |
BRC_Z2 | not sig. | not sig. | No | 0.563 | 0.688 | 0.620 | 1.0 | 1.0 | 1.0 |
Pathway-specific | Â | Â | Â | Â | Â | Â | miRNA | siRNA | PIWI |
M19 (miRNA) | not sig. | not sig. | Yes | 0.188 | 0.100 | 0.033 | 4.5 | 1 | 1 |
M21 (miRNA) | not sig. | not sig. | Yes | 0.219 | 0.100 | 0.067 | 2 | 2 | 1 |
M24 (siRNA) | not sig. | not sig. | Yes | 0.063 | 0.400 | 0.200 | 1 | 14 | 1 |
M26 (siRNA) | not sig. | not sig. | Yes | 0.031 | 0.250 | 0.033 | 2 | 3 | 2 |
M30 (PIWI) | not sig. | not sig. | Yes | 0.000 | 0.000 | 0.060 | NA | NA | 5 |
Species-Specific | Â | Â | Â | Aae | Aga | Cpi | Aae | Aga | Cpi |
M1 (Aedes) | not sig. | not sig. | Yes | 0.188 | 0.100 | 0.033 | 1.5 | 1.5 | 1 |
M2 (Aedes) | not sig. | not sig. | Yes | 0.219 | 0.100 | 0.067 | 2 | 2 | 1 |
M3 (Aedes) | not sig. | not sig. | Yes | 0.094 | 0.000 | 0.033 | 9 | NA | 1 |
M7 (Anopheles)# | not sig. | not sig. | Yes | 0.063 | 0.400 | 0.200 | 10.5 | 1.5 | 1 |
M8 (Anopheles) # | not sig. | not sig. | Yes | 0.031 | 0.250 | 0.033 | 10 | 1 | 1 |
M9 (Anopheles) | < 0.001 | 0.002 | No | 0.000 | 0.400 | 0.300 | NA | 6 | 1 |
M12 (Culex)+ | not sig. | not sig. | Yes | 0.031 | 0.000 | 0.067 | 1 | NA | 21 |
M13 (Culex)+ | not sig. | not sig. | Yes | 0.031 | 0.000 | 0.067 | 1 | NA | 21 |
M17 (Culex) | < 0.001 | 0.002 | No | 0.094 | 0.100 | 0.533 | 1 | 1 | 1 |