Table 2 Overview of transcripts in livers of rainbow trout significantly affected by the dietary treatment (HE vs LE diet)1
Statistical analysis | ANOVA (p < 0.01) | SAM FDR ≤ 0.15 | ANOVA∩SAM |
|---|---|---|---|
Total | 165 | 111 | 106 |
HE > LE | 37 | 8 | 8 |
HE < LE | 128 | 103 | 98 |
Number of transcripts with known biological function | 132 | 87 | 83 |
Biological function | |||
Metabolism | 52 (39.4%) | 38 (43.7%) | 37 (44.6%) |
Lipid | 19 (14.4%) | 15 (17.2%) | 15 (18.1%) |
Energy | 7 (5.3%) | 5 (5.7%) | 5 (6.0%) |
Carbohydrate | 1 (< 1%) | 1 (1.1%) | 1 (1.2%)) |
Amino acid and derivative | 5 (3.8%) | 3 (3.4%) | 3 (3.6%) |
Protein folding/synthesis/breakdown | 11 (8.3%) | 6 (6.9%) | 6 (7.2%) |
Xenobiotic and oxidant metabolism | 5 (3.8%) | 4 (4.6%) | 4 (4.8%) |
Purine and pyrimidine | 4 (3%) | 4 (4.6%) | 3 (3.6%) |
Transcription/translation | 21 (15.9%) | 13 (15.1%) | 12 (14.5%) |
Cell cycle | 13 (9.8%) | 6 (6.9%) | 6 (7.2%) |
Trafficking | 9 (6.8%) | 6 (6.9%) | 6 (7.2%) |
Signal transduction | 8 (6.1%) | 7 (8.0%) | 7 (8.4%) |
Extracellular matrix and structural components | 6 (4.5%) | 5 (5.7%) | 5 (6%) |
Immune and stress response | 6 (4.5%) | 5 (5.7%) | 4 (4.8%) |
Others | 17 (12.9%) | 7 (8.0%) | 6 (7.2%) |