Multiple genome alignment for identifying the core structure among moderately related microbial genomes

BMC Genomics

Table 1 Genomic data used in this work.

Bacillaceae	Group	Abbrev.	Accession No.	CDS	GC%
Bacillus subtilis 168	1*	B. sub (bsu)	NC_000964.2	4105	43.5
Bacillus licheniformis ATCC 14580	1	B. lic (bli)	NC_006270.2	4152	46.2
Bacillus halodurans C-125		B. hal (bha)	NC_002570.2	4066	43.7
Bacillus clausii KSM-K16		B. cla (bcl)	NC_006582.1	4096	44.8
Bacillus anthracis Ames	2*	B. ant (ban)	NC_003997.3	5311	35.4
Bacillus cereus 14579	2	B. cer (bce)	NC_004722.1	5234	35.3
Geobacillus kaustophilus HTA426		G. kau (gka)	NC_006510.1	3498	52.0
Oceanobacillus iheyensis HTE831		O. ihe (oih)	NC_004193.1	3500	35.7
(outgroup)
Staphylococcus aureus N315		S. aur (sau)	NC_002745.2	2588	32.8
*Enterobacteriaceae*
Escherichia coli K-12	3*	E. col (eco)	NC_000913.2	4131	50.8
Salmonella enterica CT18	3	S. ent (sty)	NC_003198.1	4395	51.9
Enterobacter sp. 638	3	Enter (ent)	NC_009436.1	4115	52.9
Erwinia carotovora SCR11043		E. car (eca)	NC_004547.2	4472	51.0
Photorhabdus luminescens TTO1		P. lum (plu)	NC_005126.1	4683	42.8
Sodalis glossinidius 2516		S. glo (sgl)	NC_007712.1	2432	54.5
Serratia proteamaculans 568		S. pro (spe)	NC_009832.1	4891	55.0
Yersinia pestis CO92		Y. pes (ype)	NC_003143.1	3885	47.6
(outgroup)
Vibrio cholerae N16961		V. cho (vch)	NC_002506.1 NC_002505.1	3835	47.5

In the Group column, organisms with the same number are those considered to be so close that they are counted only once; organisms with an asterisk are representative genomes for each of the closely related genome groups, which were used in the robustness test and the phylogenetic congruence test. In the Abbrev column, the abbreviated names used in this paper are shown in italic; the names in parentheses are the abbreviated names used in KEGG and MBGD.

ISSN: 1471-2164