Table 1 The different sequence sets used in the validation experiment.
class | fraction | abbrev. | size | source |
|---|---|---|---|---|
WGS | Pilot Bacterial Artificial Chromosomes | BAC | 14.8 | [35] |
WGS | BAC End Sequences | BES | 8.0 | AGI [50] |
Repeat | Transposable Elements | RepI | 8.0 | MIPS [28] |
Repeat | DNA transposons | RepII | 0.1 | MIPS [28] |
GE | Expressed Sequence Clusters | EST | 56.3 | PlantGDB [51] |
GE | AZM4 High-C0t | AZM4 HC | 188.8 | TIGR [52] |
GE | AZM4 Methyl-filtered | AZM4 MF | 156.8 | TIGR [52] |
GA | TIGR4 assembly of rice (Oryza sativa L. ssp. japonica) | Osj:TIGR4 | 420.0 | TIGR [37] |
GA | TAIR7 assembly of Arabidopsis thaliana | At:TAIR7 | 115.4 | TAIR [42] |
GA | JGI1.1 assembly of poplar (Populus trichocarpa) | Pt:JGI1.1 | 410.0 | [43] |
GA | Genoscope1 assembly of grapevine (Vitis vinifera) | Vc:GEN1 | 487.0 | [44] |