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Table 2 Development-related alternatively spliced genes.

From: Prediction of alternatively skipped exons and splicing enhancers from exon junction arrays

 

Lung

Brain

Liver

Significant genes

395

631

482

Genes with PubMed tissue keyword

27 (7%)

127 (20%)

52 (11%)

% of all genes with keyword

5%

11%

7%

p-value

3.57e-02

1.04e-12

9.62e-04

Genes with "splicing" keywords

92 (23%)

135 (21%)

93 (19%)

% of all genes with keywords

12%

12%

12%

p-value

5.46e-11

1.26e-12

8.01e-07

Genes with PubMed tissue, "development" or "splicing" keywords

135 (34%)

258 (41%)

160 (33%)

% of all genes with keywords

23%

26%

25%

p-value

3.14e-07

4.57e-16

2.21e-05

  1. A keyword hit is defined as a gene that has at least 2 abstracts with the keyword. The numbers in parentheses indicate the percentage of genes with a keyword hit within that gene set. Tissue keyword is the tissue name.