Table 1 Features of SuperSAGE libraries from control and drought stressed roots
From: SuperSAGE: the drought stress-responsive transcriptome of chickpea roots
Library | Control | 6 h desiccation | Total (%) |
|---|---|---|---|
Sequenced tags | 28,897 | 53,141 | 82,238 (100) |
Number of unique transcripts (UniTags) | 9,110 | 13,899 | 17,493 (100) |
Differential gene expression (absolute values) | (downregulated*) | (up-regulated*) | Â |
R(ln) > 1; 2.7-fold differential expression | 4,975 | 2,557 | 7,532 (43) |
R(ln) > 2; 8.0-fold differential expression | 589 | 291 | 880 (5) |
Abundance classes | Â | Â | Â |
> 5,000 copies.million-1 | - | - | 12 (0.1) |
1,000 – 5,000 copies.million-1 | - | - | 186 (1) |
100–1,000 copies.million-1 | - | - | 4,160 (24) |
2–100 copies.million-1 | - | - | 13,135 (75) |
Annotation of Unitags | Â | Â | Â |
Match to UniProt entries | 2,124 | 3,165 | 3,858 (22) |
Match to anonymous entries | - | - | 5,685 (32) |
No match | Â | Â | 7,956 (45) |