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Table 3 List and characteristics of the genomes belonging to the phyla Basidiomycota, Chytridiomycota, and Microsporidia, the subphylum Mucoromycotina, and the phylum Peronosporomycota (oomycetes) archived in SNUGB.

From: SNUGB: a versatile genome browser supporting comparative and functional fungal genomics

Speciesa

Size (Mb)

# of ORFs

# of Exons

Cb

Ib

Eb

Source

Refs

Fungi (Kingdom)e

        

   Basidiomycota (Phylum)

        

Agricomycotina (Subphylum)

        

Postia placenta

90.9

17,173

116,596

N

Y

N

JGI

N

T: Phanerochaete chrysosporium A: Sporotrichum pruinosum

35.1

10,048

58,746

N

Y

N

JGI

[79]

Coprinus cinereus

36.3

13,544

72,887

N

Y

N

BI

N

Laccaria bicolor

64.9

20,614

111,290

N

Y

N

JGI

[80]

A: Cryptococcus neoformans Serotype A T: Filobasidiella neoformans Serotype A

19.5

7,302

43,325

20

Y

N

BI

N

A: Cryptococcus neoformans Serotype B T: Filobasidiella neoformans Serotype B

19.0

6,870

40,589

N

Y

N

NCBI

N

A: Cryptococcus neoformans Serotype D B-3501A T: Filobasidiella neoformans Serotype D B-3501A

18.5

6,431

40,942

N

Y

N

SGTC

[41]

A: Cryptococcus neoformans Serotype D JEC21 T: Filobasidiella neoformans Serotype D JEC21

19.1

6,475

40,811

N

Y

N

SGTC

[41]

Pucciniomycotina (Subphylum)

        

Sporobolomyces roseus

21.2

5,536

39,911

N

Y

N

JGI

N

Puccinia graminis

88.7

20,567

95,838

N

Y

N

BI

N

Ustilaginomycotina (Subphylum)

        

Malassezia globosa CBS7966

9.0

4,286

4,286

N

N

N

PGC

[15]

Malassezia restricta CBS7877c

4.6

N

N

N

N

N

PGC

[15]

Ustilago maydis 521

19.7

6,689

11,589

N

Y

N

BI

[81]

Ustilago maydis FB1

19.3

6,950

10,310f

N

Y

N

BI

[81]

   Chytridiomycota (Phylum)

        

Batrachochytrium dendrobatidis JEL423

23.9

8,818

38,551

N

Y

N

BI

N

Batrachochytrium dendrobatidis JAM81

24.3

8,732

37,423

N

Y

N

JGI

N

   Mucoromycotina (Subphylum incertae sedis )

        

Rhizopus oryzae

46.1

17,467

57,981

N

Y

N

BI

N

Phycomyces blakesleeanus

55.9

14,792

71,502

N

Y

N

JGI

N

   Microsporidia (Phylum)

        

Encephalitozoon cuniculi

2.5

1,996

2,002

N

Y

N

GS

[82]

Antonospora locustae d

6.1

2,606

N

N

N

N

JBPC

N

Stramenopila (Kingdom) e

        

   Peronosporomycota (Phylum)

        

Phytophthora capsici

107.8

17,414

45,661

N

N

N

JGI

N

Phytophthora infestans d

228.5

22,658

N

N

N

N

BI

N

Phytophthora ramorum

66.7

15,743

40,639

N

Y

N

JGI

[83]

Phytophthora sojae

86.0

19,027

53,552

N

Y

N

JGI

[83]

Hyaloperonospora parasitica

83.6

14,789

24,907

N

Y

N

VBI

N

Pythium ultimum

44.3

N

N

N

N

N

 

N

Total

1,241.5

276,527

1,058,878

1

20

0

  
  1. aA indicates anamorph name and T presents teleomorph name of fungi
  2. bC means chromosomes, I indicates InterPro, and E presents EST.
  3. cIncomplete coverage of genome information
  4. dInsufficient exon/intron information
  5. eTaxonomy based on [28]
  6. fORFs and exons were predicted by AUGUSTUS 2.0.3 with species-specific training datasets [55].
  7. 'Y' indicates the existence of information in each field, and 'N' indicates the lack of information.
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BMC Genomics

ISSN: 1471-2164

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