Figure 5
From: Transcriptional activity around bacterial cell death reveals molecular biomarkers for cell viability
Heat-induced expression profiles in gene clusters. Presentation of 2log ratios of the gene clusters a – j. Color coding ranges from green (2log ratio = -3) via black (2log ratio is 0) to red (2log ratio is 3); the grey color indicates no signal with the filters applied. (a) the class III heat shock operon ctsR, mcsA, mcsB, clpC, the DNA repair gene radA, and genes of unknown function yacK-N, (b) rplK-rpsI, a region of 67 ORFs, encoding at least 47 ribosomal proteins, (c) the surfactin syntetase/competence genes srfAB-srfAD, (d) the mobile genetic element, ICEBs1, an integrative and conjugative element, (excision requires the integrase, ydcL, predicted to encode a tyrosine recombinase similar to that of phage lambda, and the excisionase, sacV), (e) the genes ydhM-T involved in carbohydrate metabolism, (f) the inner spore coat genes cotJA-C and upstream genes yezE-yesF, (g) pyrimidin biosynthesis gene cluster pyrB-E, (h) the class I heat shock regulon hrcA-yqeV, (i) the L-arabinose operon araA-Q and (j) the genes iolB-I involved in myo-inositol catabolism.