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Table 1 K a /K s values of uORF and associated mORFs correlated to most distantly related organism containing uORF-mORF association in an EST

From: Comparative genomic analysis of novel conserved peptide upstream open reading frames in Drosophila melanogaster and other dipteran species

CG identifier

uORF

mORF

Most distantly related organism (NCBI accession #), most closely shared taxonomic classification with D. melanogastera

CG18624

0.11****

0.06****

Boomicb (CV448373), Arthropoda

CG12664

0.26**

0.15****

Drovir (EB568517), Drosophila

CG12788/CG17767

0.32****

0.28****

Anogam (CD747020), Diptera

CG33713/CG33714

0.06****

0.13***

Carmae (DW250045), Pancrustacea

CG3240

0.11****

0.11****

Dromoj (EB613491), Drosophila

CG9960/CG9958

0.02****

0.07****

Dapmag (DY0373460), Pancrustacea

CG31917

0.00****

0.09****

Bommor (DY230769), Endopterygota

CG31919/CG33995

0.10**

0.31*

Glomor (DV616490), Schizophora

CG18042

0.01****

0.29*

Bommor (AU003981), Endopterygota

CG7400

0.10*

0.06****

Dropse (DR124033), Sophophora

CG16974

0.00**

0.14****

Dropse (DR133486), Sophophora

CG4824

0.04***

0.17***

Dropse (DR131819), Sophophora

CG17325

0.08****

0.07****

Drogri (EB611588), Drosophila

CG10570

0.28**

0.19****

Drogri (EB601583), Drosophila

CG11508

0.13****

0.54**

Glomor (DV620389), Schizophora

CG8026

0.31*

0.04****

Drogri (EB598775), Drosophila

CG17759 (uORF2)

0.33*

0.02****

Dromoj (EB608824), Drosophila

CG33671/CG33672

0.07****

0.14****

Apimel (DB747777), Endopterygota

CG6191

0.13**

0.05***

Drogri (EB625487), Drosophila

CG30100

0.08****

0.09****

Ixosca (DN974785), Arthropoda

CG17725

0.00*

0.06****

Drowil (EB488086), Sophophora

CG5469

0.10****

0.07****

Aedaeg (EB099927), Diptera

CG33786/CG33785

0.03**

0.16****

Bommor (BB992822), Endopterygota

CG9865 (uORF1)

0.12****

0.30****

Drowil (EB454746), Sophophora

CG9865 (uORF2)

0.07****

0.30****

Aedaeg (DV278474), Diptera

CG9865 (uORF3)

0.04****

0.30****

Acypis (CV847404), Neoptera

CG9878

0.30**

0.04****

Ixosca (AF483733), Arthropoda

CG30290

0.00****

0.05*

Carmae (DY308116), Pancrustacea

CG12016

0.12****

0.12****

Acypis (CN762015), Neoptera

CG32573

0.42***

0.19****

Drowil (EB501531), Sophophora

CG11989

0.04****

0.01****

Myzper (EE261505), Neoptera

CG7869

0.09****

0.12****

Dromoj (EB608881), Drosophila

CG7628

0.10**

0.03****

Glomor (DV612431), Schizophora

CG9666

0.29****

0.04****

Artfra (BQ605225), Pancrustacea

CG2128

0.24****

0.00****

Bommor (BY914486), Endopterygota

CG9288

0.16****

0.17****

Aedaeg (DV427990), Diptera

CG9924

0.08*

0.12****

Drovir (EB563704), Drosophila

CG31241

0.23****

0.00*

Dromoj (EB603524), Drosophila

CG31178

0.31***

0.33**

Drovir (EB564030), Drosophila

CG7071/CG34131

0.08****

0.20****

Lutlon (AM099995), Diptera

CG10238

0.29****

0.12****

Taegut (DV959401), Coelomata

CG5116

0.15**

0.16****

Drowil (EB489685), Sophophora

CG14550

0.13*

0.21****

Bommor (CK562143), Endopterygota

CG7950

0.35****

0.04****

Myzper (EE263186), Neoptera

  1. a D. melanogaster taxonomic classification as described by NCBI
  2. b Abbreviations: Boomic, Boophilus microplus; Drovir, Drosophila virilis; Anogam, Anopheles gambiae; Carmae, Carcinus maenas; Dromoj, Drosophila mojavensis; Dapmag, Daphnia magna; Bommor, Bombyx mori; Glomor, Glossina morsitans; Dropse, Drosophila pseudoobscura; Drovir, Drosophila virilis; Drogri, Drosophila grimshawi; Apimel, Apis mellifera; Ixosca, Ixodes scapularis; Drowil, Drosophila willistoni; Aedaeg, Aedes aegypti; Acypis, Acyrthosiphon pisum; Myzper, Myzus persicae; Artfra, Artemia franciscana; Lutlon, Lutzomyia longipalpis; Taepyg, Taeniopygia guttata
  3. * p-value < 0.05; H0: K a /K s = 1, H A : K a /K s < 1
  4. ** p-value < 0.01
  5. *** p-value < 0.001
  6. ****p-value < 0.0001
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BMC Genomics

ISSN: 1471-2164

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