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Table 1 Genes showing ≥ 2-fold change in expression between DGAT1 transgenics and untransformed control (cv. Quantum).

From: Transgenic increases in seed oil content are associated with the differential expression of novel Brassica-specific transcripts

GenBank accession #

Top hit in Arabidopsis

Description

Fold change

Regulation

   

Day18

Day22

Day26

 

CX278332

No hit

Novel

11.7

14.7

25.8

Down

CN726366

No hit

Novel

14.1

21.5

16.0

Down

EE462460

At3g09950

Similar to hypothetical protein

20.6

18.6

15.0

Down

CX279214

No hit

Novel

ND

7.1

5.5

Down

EE549605

No hit

Novel

6.0

4.9

3.2

Down

EE436000

At1g70770

Similar to unknown protein

5.2

3.21

4.2

Down

DY004194

At3g22600

Protease inhibitor/seed storage/lipid transfer protein (LTP) family protein

ND

ND

3.75

Down

EE550782

At1g73600

Phosphoethanolamine N-methyltransferase

ND

1.8

4.3

Down

EE569901

At5g56530

Similar to unknown protein

2.8

1.6

2.3

Down

EE544201

No hit

Novel

2.9

2.5

3.3

Down

EE404484

No hit

Novel

2.0

2.51

2.2

Down

CN726984

At2g43050

Pectinesterase-like protein ATPMEPCRD;pectinesterase

1.7

2.8

ND

Down

EE541726

At1g74370

Zinc finger (C3HC4-type RING finger) family protein

2.5

2.4

1.7

Down

CN726378

At5g45690

Similar to unknown protein

ND

2.3

1.7

Down

EE548935

Atmg00910

Hypothetical mitochondrial protein

ND

2.0

ND

Down

EE549536

At5g26260

Meprin and TRAF homology domain-containing protein

2.9

4.8

ND

Up

DY009332

At5g45890

SAG12 (Senescence-associated gene 12)

ND

4.5

1.7

Up

CN731950

At1g10190

Similar to unknown protein

ND

4.4

ND

Up

EE462239

At1g52400

BGL1 (Beta-glycosidase homolog 1)

4.4

2.6

ND

Up

CN729787

At3g20210

DELTA-VPE (delta vacuolar processing enzyme)

ND

4.9

ND

Up

EE569354

At3g20210

DELTA-VPE (delta vacuolar processing enzyme)

ND

4.0

1.4

Up

EE462019

At5g26280

Meprin and TRAF homology domain-containing protein

3.8

3.7

1.7

Up

CN729334

At5g59310

LTP4 (Lipid transfer protein 4)

2.5

3.8

ND

Up

CX272737

At1g04645

Self-incompatibility protein-related

ND

3.6

ND

Up

CN729331

At5g45890

SAG12 (Senescence-associated gene 12)

1.6

3.5

ND

Up

DY009689

At3g24120

Myb family transcription factor

ND

3.2

1.4

Up

CN731251

No hit

Novel

ND

3.1

1.9

Up

CN737110

At5g57920

Plastocyanin-like domain-containing protein

ND

3.0

ND

Up

DY013300

At4g37900

Glycine-rich protein

ND

2.9

ND

Up

EE541123

At4g30880

Protease inhibitor/seed storage/lipid transfer protein (LTP) family protein

ND

2.7

ND

Up

EE543120

At5g46930

Invertase/pectin methylesterase inhibitor family protein

ND

2.6

ND

Up

CX273000

At4g37900

Glycine-rich protein

ND

2.6

ND

Up

CN726334

No hit

Novel

2.5

1.9

ND

Up

CN730052

At1g71250

GDSL-motif lipase/hydrolase family protein

ND

2.4

1.7

Up

DY009919

At5g33340

CDR1(Constitute disease resistance1)

ND

2.4

2.1

Up

DY007598

At1g45130

BGAL5 (beta-galactosidase 5)

ND

2.3

1.7

Up

  1. Fold-change values obtained using ≤ 5% False Discovery Rate (FDR) and a q-value = 0. ND, not detected by microarrays; No hit, probe sequence did not hit any gene in Arabidopsis.