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Table 4 Divergence among the human, cynomolgus, and rhesus genes

From: Large-scale analysis of Macaca fascicularis transcripts and inference of genetic divergence between M. fascicularis and M. mulatta

Model without ancestral polymorphisms (Raw data)

Lineagea

K a (± S.E.)

K s (± S.E.)

H-O

1.06 × 10-2 (3.20 × 10-4)

6.82 × 10-2 (1.07 × 10-3)

C-O

1.02 × 10-3 (4.79 × 10-5)

3.04 × 10-3 (1.20 × 10-4)

R-O

4.98 × 10-4 (3.36 × 10-5)

2.50 × 10-3 (1.15 × 10-4)

Model with ancestral polymorphisms

 

2tub(± S.E.)

4N e ub (± S.E.)

Raw data

2.13 × 10-3 (2.24 × 10-4)

3.27 × 10-3 (2.52 × 10-4)

PCR error corrected

1.81 × 10-3 (2.12 × 10-4)

3.11 × 10-3 (2.40 × 10-4)

  1. aH: human, C: cynomolgus macaque, R: rhesus macaque, O: cynomolgus-rhesus ancestor (see Fig. 7).
  2. bt: time after speciation; u: mutation rate; N e : effective population size of the cynomolgus-rhesus ancestor.