From: Improving the specificity of exon prediction using comparative genomics
clearly orthologous exons (TP) | potential non-exons (FP) | |
---|---|---|
size | 76,229 | 1, 518, 082 |
GENSCAN (w/mouse) | 53,217 (69.8%) | 54,360 (3.58%) |
GENSCAN (w/mouse) S > -0.33 | 52,682 (69.1%) | 14,604 (0.95%) |
TWINSCAN (w/mouse) | 54,879 (72.0%) | 12,276 (0.8%) |
TWINSCAN (w/mouse) S > -0.12 | 54,331 (71.3%) | 7,876 (0.5%) |
shortHMM S > 0.69 (w/mouse) | 74.5% | 0.77% |